View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11089_low_12 (Length: 486)
Name: NF11089_low_12
Description: NF11089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11089_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 294 - 469
Target Start/End: Original strand, 54530742 - 54530917
Alignment:
| Q |
294 |
ccagatgcaattgcataagcagtactaagctttgattccgaagaaagtccttcagaagaggcaagaacaatagcaacattgcttgcctgagcagacttag |
393 |
Q |
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| T |
54530742 |
ccagatgcaattgcataagcagtactaagctttgattccgaagaaagtccttcagaagaggcaagaacaatagcaacattgcttgcctgagcagacttag |
54530841 |
T |
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| Q |
394 |
caaccgcgacaacagcctcaccaagacccttatacagtgcagtagttgaaggtaactgaccaagaccgatcaaacc |
469 |
Q |
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| T |
54530842 |
caaccgcgacaacagcctcaccaagacccttatacagtgcagtagttgaaggtaactgaccaagaccgatcaaacc |
54530917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 14 - 230
Target Start/End: Original strand, 54530462 - 54530678
Alignment:
| Q |
14 |
acatcaaatgcagctataaaaatcacaagctcacattcacacaaacgcgcgcacatatacacacaacacgagtaaggatcctcgccatttctaaagtttg |
113 |
Q |
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| T |
54530462 |
acatcaaatgcagctataaaaatcacaagctcacattcacacacgcgcgcgcacatatacacacaacacgagtaaggatcctcgccatttctaaagtttg |
54530561 |
T |
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| Q |
114 |
tgatgataaaagtcaatgtttctaaaaatggtgacatgtannnnnnnnnnnngtataattaaactttatacactcaaaacattagtaaatagtaatggag |
213 |
Q |
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| T |
54530562 |
tgatgacaaaagtcaatgtttctaaaaatggtgacatgtatttttattttttgtataattaaactttatacactcaaaacattagtaaatagtaatggag |
54530661 |
T |
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| Q |
214 |
agatccctattttaaca |
230 |
Q |
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| T |
54530662 |
agatccctattttaaca |
54530678 |
T |
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