View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11089_low_15 (Length: 447)
Name: NF11089_low_15
Description: NF11089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11089_low_15 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 14 - 447
Target Start/End: Original strand, 6945750 - 6946183
Alignment:
| Q |
14 |
agagcacaggttacaacattaatcaatggtgtgtgaatccgacggtgtgtatgggcgatatagtgacctgaagtttcagaccagattgatgcattggtgt |
113 |
Q |
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| T |
6945750 |
agagcacaggttacaacattaatcaatggtgtgtgaatccgagggtgtgtatgggcgatatagtgacctgaagtttcagaccagattgatgcattggtgt |
6945849 |
T |
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| Q |
114 |
tttgtctcactgtttctgtattagttgtcttggaggtctcattttagttttctttaatggcagcagattggggtattttgtcttttgattcgctaacggt |
213 |
Q |
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| T |
6945850 |
tttgtctcactgtttctgtattagttgtcttggaggtctcattttagttttctttaatggcagcagattggggtattttgtcttttgattcgctaacagt |
6945949 |
T |
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| Q |
214 |
taactgtttttcctttgcattgtgaggtttggtgggtcaggtgatctgtggagtttaatcctttggtgaaatagttgattgttggtcaatcttctgggat |
313 |
Q |
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| T |
6945950 |
taactgtttttcctttgcattgtgaggtttggtgggtcaggtgatctgtggagtttaatcctttggtgaaatagttgattgttggtcaatcttctgggat |
6946049 |
T |
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| Q |
314 |
gtagttcatggtgccttttctctggcttgataggagttgtagagatgttacaattttggaaaggctcttggttggatctttggtgttggtgaagtataat |
413 |
Q |
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| T |
6946050 |
gtagttcatggtgccttttctctggcttgataggagttgtagagatgttacaattttgaaaaggctcttggttggatctttggtgttggtgaagtataat |
6946149 |
T |
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| Q |
414 |
tctgaggtatgttaattgcattgttgagtcgtct |
447 |
Q |
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| T |
6946150 |
tctgaggtatgttaattgcattgttgagtcgtct |
6946183 |
T |
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