View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11089_low_17 (Length: 424)
Name: NF11089_low_17
Description: NF11089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11089_low_17 |
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| [»] scaffold0191 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 37588433 - 37588838
Alignment:
| Q |
1 |
ttttggtttcggaaaggaatttgttgtgtaacagtagaatttactatcaataagcagcaccattttcctttttgttttgatctacctatcatatgcttga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37588433 |
ttttggtttcggaaaggaatttgttgtgtaacagtagaatttactatcaataagcagcaccattttcctttttgttttgatctacctatcatatgcttga |
37588532 |
T |
|
| Q |
101 |
aggtttgtatagtcatgaaatgtaattatccaagttgttgaacataatacttcaatggatttcttttcaaatatgcttgatctaatatgacatnnnnnnn |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37588533 |
aggtttgtatagtcatgaaatgtaattatccaagttgttgaacataatacttcaatggatttcttttcaaatatgcttgatctaatatgacataaaaaaa |
37588632 |
T |
|
| Q |
201 |
gagcatcaacttgacagtcttgacttttctatgaaatataatttatgttgcctttataaatttggatatggttaactgcataatgaagggtataaataaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37588633 |
gagcatcaacttgacagtcttgacttttctatgaaatataatttatgttgcctttataaatttggatatggttaactgcataatgaagggtataaataaa |
37588732 |
T |
|
| Q |
301 |
taagatgaaaccaaaaacgttggaaaccattactgggtctattaagcatataggaagcccagaaaaataatcaggttctcacaatgccagtatggttgtt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37588733 |
taagatgaaaccaaaaacgttggaaaccattactgggtctattaagcatataggaagcccagaaaaataatcaggttctcacaatgccagtatggttgtt |
37588832 |
T |
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| Q |
401 |
attttc |
406 |
Q |
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|||||| |
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| T |
37588833 |
attttc |
37588838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0191 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0191
Description:
Target: scaffold0191; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 26936 - 26900
Alignment:
| Q |
151 |
ttcaatggatttcttttcaaatatgcttgatctaata |
187 |
Q |
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|||||||||||||||||||||||||| |||||||||| |
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| T |
26936 |
ttcaatggatttcttttcaaatatgcctgatctaata |
26900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 10435317 - 10435353
Alignment:
| Q |
151 |
ttcaatggatttcttttcaaatatgcttgatctaata |
187 |
Q |
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|||||||||||||||||||||||||| |||||||||| |
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| T |
10435317 |
ttcaatggatttcttttcaaatatgcctgatctaata |
10435353 |
T |
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