View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11089_low_18 (Length: 421)
Name: NF11089_low_18
Description: NF11089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11089_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 8 - 406
Target Start/End: Original strand, 41108055 - 41108453
Alignment:
| Q |
8 |
aagcagagaaggaattagaggaaaccattggattaggcaaaccaattgaggaatcagatattgataggcttccatacttgaatgcagtgataaaagagag |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41108055 |
aagcaaagaaggaattagaggaaaccattggattaggcaaaccaattgaggaatcagatattgataggcttccatacttgaatgcagtgataaaagagag |
41108154 |
T |
|
| Q |
108 |
tttacgtttacaccctccagctccaatgttacttcctaggaaagcaagggtagatgtggaaatagcaggttacacaattccaaaaggtgcacaagttttg |
207 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
41108155 |
tttacgtttacaccctccagctccaatgttacttcctaggaaagcaagggtagatgtggaaatagcaggttacacaattccaaaaggtgcacaagttctg |
41108254 |
T |
|
| Q |
208 |
atcaatgaatgggctattggtagaacagaaatatgggatgatgcacatttgttttcaccagaaagatttttgggttctgaaattgatgtcaaaggtcgac |
307 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41108255 |
atcaatgaatgggctattggtagaacagacatatgggatgatgctcatttgttttcaccagaaagatttttgggttctgaaattgatgtcaaaggtcgac |
41108354 |
T |
|
| Q |
308 |
attttaagcttacaccgttcggcagtggaagacgtatatgtcctggctcaccacttgctattaggatgttgcatttgatgttgggatcattgatcaact |
406 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
41108355 |
attttaagcttacaccgttcggtagtggaagacgtatatgtcctggctcaccacttgctgttaggatgttgcatttgatgttgggatcattgatcaact |
41108453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 8 - 406
Target Start/End: Complemental strand, 41119362 - 41118964
Alignment:
| Q |
8 |
aagcagagaaggaattagaggaaaccattggattaggcaaaccaattgaggaatcagatattgataggcttccatacttgaatgcagtgataaaagagag |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41119362 |
aagcaaagaaggaattagaggaaaccattggattaggcaaaccaattgaggaatcagatattgataggcttccatacttgaatgcagtgataaaagagag |
41119263 |
T |
|
| Q |
108 |
tttacgtttacaccctccagctccaatgttacttcctaggaaagcaagggtagatgtggaaatagcaggttacacaattccaaaaggtgcacaagttttg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
41119262 |
tttacgtttacaccctccagctccaatgttacttcctaggaaagcaagggtagatgtggaaatagcaggttacacaattccaaaaggtgcacaagttctg |
41119163 |
T |
|
| Q |
208 |
atcaatgaatgggctattggtagaacagaaatatgggatgatgcacatttgttttcaccagaaagatttttgggttctgaaattgatgtcaaaggtcgac |
307 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41119162 |
atcaatgaatgggctattggtagaacagacatatgggatgatgcacatttgttttcaccagaaagatttttgggttctgaaattgatgtcaaaggtcgac |
41119063 |
T |
|
| Q |
308 |
attttaagcttacaccgttcggcagtggaagacgtatatgtcctggctcaccacttgctattaggatgttgcatttgatgttgggatcattgatcaact |
406 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
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|
| T |
41119062 |
attttaagcttacaccgttcggtagtggaagacgtatatgtcctggctcaccacttgctgttaggatgttacatttgatgttgggatcattgatcaact |
41118964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 8 - 406
Target Start/End: Original strand, 41129179 - 41129577
Alignment:
| Q |
8 |
aagcagagaaggaattagaggaaaccattggattaggcaaaccaattgaggaatcagatattgataggcttccatacttgaatgcagtgataaaagagag |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41129179 |
aagcaaagaaggaattagaggaaaccattggattaggcaaaccaattgaggaatcagatattgataggcttccatacttgaatgcagtgataaaagagag |
41129278 |
T |
|
| Q |
108 |
tttacgtttacaccctccagctccaatgttacttcctaggaaagcaagggtagatgtggaaatagcaggttacacaattccaaaaggtgcacaagttttg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
41129279 |
tttacgtttacaccctccagctccaatgttacttcctaggaaagcaagggtagatgtggaaatagcaggttacacaattccaaaaggtgcacaagttctg |
41129378 |
T |
|
| Q |
208 |
atcaatgaatgggctattggtagaacagaaatatgggatgatgcacatttgttttcaccagaaagatttttgggttctgaaattgatgtcaaaggtcgac |
307 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41129379 |
atcaatgaatgggctattggtagaacagacatatgggatgatgctcatttgttttcaccagaaagatttttgggttctgaaattgatgtcaaaggtcgac |
41129478 |
T |
|
| Q |
308 |
attttaagcttacaccgttcggcagtggaagacgtatatgtcctggctcaccacttgctattaggatgttgcatttgatgttgggatcattgatcaact |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||| |
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|
| T |
41129479 |
attttaagcttacaccgttcggcagtggaagacgtatatgtcctggctcaccacttgctgttaggatgtttcatttgatgttgggatcattgattaact |
41129577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 8 - 406
Target Start/End: Complemental strand, 41143504 - 41143106
Alignment:
| Q |
8 |
aagcagagaaggaattagaggaaaccattggattaggcaaaccaattgaggaatcagatattgataggcttccatacttgaatgcagtgataaaagagag |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41143504 |
aagcaaagaaggaattagaggaaaccattggattaggcaaaccaattgaggaatcagatattgataggcttccatacttgaatgcagtgataaaagagag |
41143405 |
T |
|
| Q |
108 |
tttacgtttacaccctccagctccaatgttacttcctaggaaagcaagggtagatgtggaaatagcaggttacacaattccaaaaggtgcacaagttttg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
41143404 |
tttacgtttacaccctccagctccaatgttacttcctaggaaagcaagggtagatgtggaaatagcaggttacacaattccaaaaggtgcacaagttctg |
41143305 |
T |
|
| Q |
208 |
atcaatgaatgggctattggtagaacagaaatatgggatgatgcacatttgttttcaccagaaagatttttgggttctgaaattgatgtcaaaggtcgac |
307 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41143304 |
atcaatgaatgggctattggtagaacagacatatgggatgatgctcatttgttttcaccagaaagatttttgggttctgaaattgatgtcaaaggtcgac |
41143205 |
T |
|
| Q |
308 |
attttaagcttacaccgttcggcagtggaagacgtatatgtcctggctcaccacttgctattaggatgttgcatttgatgttgggatcattgatcaact |
406 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41143204 |
attttaagcttacaccgttcggaagtggaagacgtatatgtcctggctcaccacttgctgttaggatgttgcatttgatgttgggatcattgattaact |
41143106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 13789852 - 13789812
Alignment:
| Q |
187 |
ccaaaaggtgcacaagttttgatcaatgaatgggctattgg |
227 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
13789852 |
ccaaaaggtgcacaagttttgattaatgtttgggctattgg |
13789812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 27 - 406
Target Start/End: Original strand, 41035668 - 41036047
Alignment:
| Q |
27 |
ggaaaccattggattaggcaaaccaattgaggaatcagatattgataggcttccatacttgaatgcagtgataaaagagagtttacgtttacaccctcca |
126 |
Q |
| |
|
|||||||||||||| | |||||| |||||| |||||||| ||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
41035668 |
ggaaaccattggatcatgcaaactaattgaagaatcagacattgataggcttccatacttgcaagcagtgataaaagagagtttacgcttacaccctcca |
41035767 |
T |
|
| Q |
127 |
gctccaatgttacttcctaggaaagcaagggtagatgtggaaatagcaggttacacaattccaaaaggtgcacaagttttgatcaatgaatgggctattg |
226 |
Q |
| |
|
|||||| | || || || | ||||| || ||||||||| ||||||||| ||||| |||||||| ||||||||| || ||| |||||||||||||||| |
|
|
| T |
41035768 |
gctccacttttgctcccacgtaaagctagagtagatgtgcaaatagcagtgtacactattccaaagggtgcacaaattcggataaatgaatgggctattg |
41035867 |
T |
|
| Q |
227 |
gtagaacagaaatatgggatgatgcacatttgttttcaccagaaagatttttgggttctgaaattgatgtcaaaggtcgacattttaagcttacaccgtt |
326 |
Q |
| |
|
|||||||| | |||||||||||||| |||| |||||||||||||||||||| || |||||||||||| ||||||||||||| ||||| |||||||| || |
|
|
| T |
41035868 |
gtagaacaaacatatgggatgatgctgatttattttcaccagaaagatttttaggatctgaaattgatatcaaaggtcgacactttaatcttacaccatt |
41035967 |
T |
|
| Q |
327 |
cggcagtggaagacgtatatgtcctggctcaccacttgctattaggatgttgcatttgatgttgggatcattgatcaact |
406 |
Q |
| |
|
|| ||||| ||||||||||||||||| |||||| | |||||||||||| |||||| ||||||||||||| | ||||||| |
|
|
| T |
41035968 |
tggtagtgggagacgtatatgtcctggttcaccattggctattaggatgatgcattcgatgttgggatcactaatcaact |
41036047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 398
Target Start/End: Original strand, 1364792 - 1364882
Alignment:
| Q |
308 |
attttaagcttacaccgttcggcagtggaagacgtatatgtcctggctcaccacttgctattaggatgttgcatttgatgttgggatcatt |
398 |
Q |
| |
|
||||| |||| || ||||| ||||||||||| || |||||||| |||| || | ||||| ||||||||||| |||||||||||||||| |
|
|
| T |
1364792 |
attttcagctcacgccgtttggcagtggaaggcgaatatgtcccggcttgcctttggctatgaggatgttgcacatgatgttgggatcatt |
1364882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 398
Target Start/End: Complemental strand, 1406632 - 1406542
Alignment:
| Q |
308 |
attttaagcttacaccgttcggcagtggaagacgtatatgtcctggctcaccacttgctattaggatgttgcatttgatgttgggatcatt |
398 |
Q |
| |
|
||||| |||| || ||||| ||||||||||| || |||||||| |||| || | ||||| ||||||||||| |||||||||||||||| |
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|
| T |
1406632 |
attttcagctcacgccgtttggcagtggaaggcgaatatgtcccggcttgcctttggctatgaggatgttgcacatgatgttgggatcatt |
1406542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 18103899 - 18103946
Alignment:
| Q |
184 |
attccaaaaggtgcacaagttttgatcaatgaatgggctattggtaga |
231 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
18103899 |
attccaaaagatgcacaagttttgatcaatgcatgggttattggtaga |
18103946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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