View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11089_low_20 (Length: 400)
Name: NF11089_low_20
Description: NF11089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11089_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 17 - 390
Target Start/End: Original strand, 36888967 - 36889338
Alignment:
| Q |
17 |
agttaattatgcactaactcaatttatacttcccttgtcatctagataaagttaaatcacatgattcacatgagatannnnnnnaataagcaatagattc |
116 |
Q |
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| T |
36888967 |
agttaattatgcactaactcaatttatacttcccttgtcatctagataaagttaaatcacatgattcacatgagatatttttttaataagcaata--ttc |
36889064 |
T |
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| Q |
117 |
atcagtataaaattaacggcaattgatgaatgatgatacattatgaccacgaacaaaattaatctagccatatagtaaattgttacattacaccttcaat |
216 |
Q |
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| T |
36889065 |
ttcagtataaaattaacggcaattgatgaatcatgatacattatgaccacgaacaaaattaatctagccatatagtaaattgttacattacaccttcaat |
36889164 |
T |
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| Q |
217 |
taatctagccatatactatggcaatgattggtgatagtgacaacatattactcaacatttcacccgatgaagtaaatgattttctaggtgagtatacatg |
316 |
Q |
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| T |
36889165 |
taatctagccatatactatggcaatgattggtgatagtgacaacatattactcaacatttcacccgatgaagtaaatgattttctaggtgagtatacatg |
36889264 |
T |
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| Q |
317 |
ggaaggtaaatgggaaaatgttataatgatttactatgcatttccagaacaagcccacaaagcaattatctctg |
390 |
Q |
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| T |
36889265 |
ggaaggtaaatgggaaaatgttataatgatttattatgcatttccagaacaagcccacaaagcaattatctctg |
36889338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 243 - 390
Target Start/End: Original strand, 36877053 - 36877200
Alignment:
| Q |
243 |
attggtgatagtgacaacatattactcaacatttcacccgatgaagtaaatgattttctaggtgagtatacatgggaaggtaaatgggaaaatgttataa |
342 |
Q |
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| T |
36877053 |
attgttgatagtgataacatattactcaacatttcatccgatgaagttaacgattttataagtgagtacacattggaaggtaaatgggatagtgtaataa |
36877152 |
T |
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| Q |
343 |
tgatttactatgcatttccagaacaagcccacaaagcaattatctctg |
390 |
Q |
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| T |
36877153 |
ggttgtacaataaatttccagaacaagctcacacagcaattatctctg |
36877200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 243 - 390
Target Start/End: Original strand, 36896020 - 36896167
Alignment:
| Q |
243 |
attggtgatagtgacaacatattactcaacatttcacccgatgaagtaaatgattttctaggtgagtatacatgggaaggtaaatgggaaaatgttataa |
342 |
Q |
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|||| ||||||||| ||||||||||||||||||||| |||||||| | || |||||| || ||||||| |||| ||||||||||||||| | ||| |||| |
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| T |
36896020 |
attgttgatagtgataacatattactcaacatttcatccgatgaaattaacgattttataagtgagtacacattggaaggtaaatgggatagtgtaataa |
36896119 |
T |
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| Q |
343 |
tgatttactatgcatttccagaacaagcccacaaagcaattatctctg |
390 |
Q |
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| T |
36896120 |
ggttgtacaataaatttccagaacaagctcacacagcaattatctctg |
36896167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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