View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11089_low_22 (Length: 394)
Name: NF11089_low_22
Description: NF11089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11089_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 20 - 207
Target Start/End: Complemental strand, 14597285 - 14597098
Alignment:
| Q |
20 |
atcctaacgtcaggtatggacgtccaggaggtgttcttaggaaacctcgtgaaccactcgatgctcctacagtagcagaatctgtgtctgtcatttcttg |
119 |
Q |
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| T |
14597285 |
atcctaacgtcaggtatggacgtccaggaggtgttcttaggaaacctcgtgaaccactcgatgctcctacagtagcagaatctgtgtctgtcatttcttg |
14597186 |
T |
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| Q |
120 |
ttggtatgtatactttgtcaaacacaaacatataagtcataaaaaatatttttgtacttatatacaatattatatatgaaaagacaac |
207 |
Q |
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| T |
14597185 |
ttggtatgtatactttgtcaaacacaaacatataagtcataaaaaatatttttgtacttatatacaatattatatatgaaaagacaac |
14597098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 258 - 320
Target Start/End: Complemental strand, 14597047 - 14596985
Alignment:
| Q |
258 |
catgtaggtatgaagacaagacagaatggggagaaagagtgggatggatttatgggtcagtga |
320 |
Q |
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| T |
14597047 |
catgtaggtatgaagacaagacagaatggggagaaagagtgggatggatttatgggtcagtga |
14596985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 258 - 320
Target Start/End: Original strand, 14611523 - 14611585
Alignment:
| Q |
258 |
catgtaggtatgaagacaagacagaatggggagaaagagtgggatggatttatgggtcagtga |
320 |
Q |
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| T |
14611523 |
catgtaggtacgaagagaagacagaatggggagacagagtgggatggatttatggatcagtga |
14611585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 327 - 374
Target Start/End: Complemental strand, 7348336 - 7348289
Alignment:
| Q |
327 |
agaacctgtgatgattgtaattgataagatacgtcaggagagggaggt |
374 |
Q |
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| T |
7348336 |
agaaccggtgatgattgtaattgataagttacgtcaggagagggaggt |
7348289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 264 - 315
Target Start/End: Complemental strand, 12192859 - 12192808
Alignment:
| Q |
264 |
ggtatgaagacaagacagaatggggagaaagagtgggatggatttatgggtc |
315 |
Q |
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| T |
12192859 |
ggtatgaagataagaccgaatggggagatagagttggatggatttacgggtc |
12192808 |
T |
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