View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11089_low_23 (Length: 393)
Name: NF11089_low_23
Description: NF11089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11089_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 193 - 376
Target Start/End: Complemental strand, 2260107 - 2259924
Alignment:
| Q |
193 |
cttaattaggaaattaataagagattgaatgattattacagcaatgctcttagattcctgagaagcttctcagattcgtggaaataaatgttgacaacct |
292 |
Q |
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| T |
2260107 |
cttaattaggaaattaataagagattgaatgattattacagcaatgctcttagattcctgagaagcttctcagattcgtggaaataaatgttgacaacct |
2260008 |
T |
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| Q |
293 |
cagagacaaagtttggtgaggtttcatcttgtagctgctggagctgcaagaattgctcatccaatactccctataagaaaaact |
376 |
Q |
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| T |
2260007 |
catagacaaagtttggtgaggtttcatcttgtagctgctggagctgcaagaattgctcatccaatactccctataagaaaaact |
2259924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 13 - 131
Target Start/End: Complemental strand, 2260287 - 2260169
Alignment:
| Q |
13 |
cacagacattagtcactctttttgcaccaatgcttgagctgcttcccataaactgattcaaatcaatccccagtttcttatagtccataaactctctctc |
112 |
Q |
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| T |
2260287 |
cacagacattagtcactctttttgcaccaatgcttgagctgcttcccataaactgattcaaatcaatccccagtttcttatagtccataaactctctctc |
2260188 |
T |
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| Q |
113 |
catcctgaataaattcacg |
131 |
Q |
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| T |
2260187 |
catcctgaataaattcacg |
2260169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 227 - 356
Target Start/End: Original strand, 44734008 - 44734137
Alignment:
| Q |
227 |
attacagcaatgctcttagattcctgagaagcttctcagattcgtggaaataaatgttgacaacctcagagacaaagtttggtgaggtttcatcttgtag |
326 |
Q |
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| T |
44734008 |
attacagcaatgatctgagattggtgagtagtttttcagactcatgaaaataaatgttgacaacttcggatacgaagttaggggaggtgtgatcttgaag |
44734107 |
T |
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| Q |
327 |
ctgctggagctgcaagaattgctcatccaa |
356 |
Q |
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||| || |||||||| |||||||||||||| |
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| T |
44734108 |
ctgttgaagctgcaaaaattgctcatccaa |
44734137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 44733780 - 44733831
Alignment:
| Q |
24 |
gtcactctttttgcaccaatgcttgagctgcttcccataaactgattcaaat |
75 |
Q |
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| T |
44733780 |
gtcactcttttagcaccaatgcttgagctgctaccaatgaattgattcaaat |
44733831 |
T |
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