View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11089_low_24 (Length: 379)
Name: NF11089_low_24
Description: NF11089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11089_low_24 |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 9e-89; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 11675971 - 11675685
Alignment:
| Q |
1 |
atatgatatcaaattcccttgaatcccataatacgataccctctctgcaacttccacacctatacaaaacattcataactcatttcaattctaatt--ac |
98 |
Q |
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|||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
11675971 |
atatgatatcaagttcccttgaatcccataatatgataccctctctgccacttccacacctatacaaaacattcataactcatttcaattctaatatcac |
11675872 |
T |
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| Q |
99 |
atttnnnnnnnnnnnnnnnn-taaacatgtcctcgctcctgtcttaaattaaagaaatagtttggtcaacaaaaattgacgtattcagttcaaaatttat |
197 |
Q |
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|||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
11675871 |
atttaaaaaaaaataaaaaaattaacatggcctcgctcctgtcttaaattaaagaaatagtttggtcaacaaaaattgacatattcagttcaaaatttat |
11675772 |
T |
|
| Q |
198 |
acttaatccaaattcatcaacttttgtcaatccaaatatctgctacatctacg--agagttaatgagtaaaacagattaatttaagcc |
283 |
Q |
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|||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
11675771 |
acttaatccaaattcatcaacttttgtcaacccaaatacctgctacatctacgagagagttaatgagtaaaaca-attaatttaagcc |
11675685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 11684250 - 11683964
Alignment:
| Q |
1 |
atatgatatcaaattcccttgaatcccataatacgataccctctctgcaacttccacacctatacaaaacattcataactcatttcaattctaatt--ac |
98 |
Q |
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|||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
11684250 |
atatgatatcaagttcccttgaatcccataatatgataccctctctgccacttccacacctatacaaaacattcataactcatttcaattctaatatcac |
11684151 |
T |
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| Q |
99 |
atttnnnnnnnnnnnnnnnn-taaacatgtcctcgctcctgtcttaaattaaagaaatagtttggtcaacaaaaattgacgtattcagttcaaaatttat |
197 |
Q |
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|||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
11684150 |
atttaaaaaaaaataaaaaaattaacatggcctcgctcctgtcttaaattaaagaaatagtttggtcaacaaaaattgacatattcagttcaaaatttat |
11684051 |
T |
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| Q |
198 |
acttaatccaaattcatcaacttttgtcaatccaaatatctgctacatctacg--agagttaatgagtaaaacagattaatttaagcc |
283 |
Q |
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|||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
11684050 |
acttaatccaaattcatcaacttttgtcaacccaaatacctgctacatctacgagagagttaatgagtaaaaca-attaatttaagcc |
11683964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 11797908 - 11797807
Alignment:
| Q |
1 |
atatgatatcaaattcccttgaatcccataatacgataccctctctgcaacttccacacctatacaaaacattcataactcatttcaattctaattacat |
100 |
Q |
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|||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||| ||| ||||||||||| ||||||||||||| ||| ||| |
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| T |
11797908 |
atatgatatcaaattcccttgaattccataatatgataccctctctgccacttccacacctaaacataacattcataattcatttcaattctcattgcat |
11797809 |
T |
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| Q |
101 |
tt |
102 |
Q |
| |
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|| |
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| T |
11797808 |
tt |
11797807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 11701864 - 11701773
Alignment:
| Q |
1 |
atatgatatcaaattcccttgaatcccataatacgataccctctctgcaacttccacacctatacaaaacattcataactcatttcaattct |
92 |
Q |
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|||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||| ||| ||||||||||| ||||| |||||| |
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| T |
11701864 |
atatgatatcaaattcccttgaattccataatatgataccctctctgccacttccacacctaaacataacattcataatccatttaaattct |
11701773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 11696067 - 11695984
Alignment:
| Q |
1 |
atatgatatcaaattcccttgaatcccataatacgataccctctctgcaacttccacacctatacaaaacattcataactcatt |
84 |
Q |
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|||||||||||||||||||||||| |||||||| ||| |||||||||| | ||||||||||| | | |||||||| || ||||| |
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| T |
11696067 |
atatgatatcaaattcccttgaattccataatatgatgccctctctgccatttccacacctaaatataacattcacaattcatt |
11695984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 16509 - 16418
Alignment:
| Q |
1 |
atatgatatcaaattcccttgaatcccataatacgataccctctctgcaacttccacacctatacaaaacattcataactcatttcaattct |
92 |
Q |
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| T |
16509 |
atatgatatcaagtttcccttaatcccaatatatgatatcctctctgctacttccacacctaaacataacattcataatccatttcaattct |
16418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 182
Target Start/End: Complemental strand, 18167427 - 18167394
Alignment:
| Q |
149 |
aagaaatagtttggtcaacaaaaattgacgtatt |
182 |
Q |
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|||||| ||||||||||||||||||||||||||| |
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| T |
18167427 |
aagaaaaagtttggtcaacaaaaattgacgtatt |
18167394 |
T |
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