View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11089_low_27 (Length: 356)
Name: NF11089_low_27
Description: NF11089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11089_low_27 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 4 - 332
Target Start/End: Original strand, 11928573 - 11928895
Alignment:
| Q |
4 |
accaaacactaatagtaaagagtgagataaaaagaatgtcagttgttagaatgcgttgcaaaaaatatgatgattcatgacaagacacaacatatataaa |
103 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||| ||| ||||||| |||| | | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
11928573 |
accaaacactaataataaagagtgagataaaaataatgtcatttgatagaatgtgttgtgacagatatgatgattcatgacaagacacaacatatataaa |
11928672 |
T |
|
| Q |
104 |
ccattagagnnnnnnnnngtactaagaagttataagtctgcattgcagttatatttcaataataaaatgatacaaaacatcaaacccacatgtcaaatcc |
203 |
Q |
| |
|
||||| | ||||||||||||||||| ||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
11928673 |
ccatttca----aaataagtactaagaagttataaatctgcattgaagttat--ttcaataataaaacgatacaaaacatcaaacccacatgtcaaatcc |
11928766 |
T |
|
| Q |
204 |
atgactaagattcaaaaatgttcaaatataataatcattcaaaacagtgaagccctaaaacctaaagtatacttattcataggcccatgggtgttcgcta |
303 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| ||| ||||||||| |||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
11928767 |
ttgactaagattctaaaatgttcaaatataataatcattcataacggtgaagcccaaaaacctaaaatatagttattcataggcccatgggtgttcgcta |
11928866 |
T |
|
| Q |
304 |
cgaatttcctcctcttcctgtggactgta |
332 |
Q |
| |
|
|||||| ||||||||||||| |||||||| |
|
|
| T |
11928867 |
cgaattgcctcctcttcctgcggactgta |
11928895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 158 - 332
Target Start/End: Original strand, 11932371 - 11932545
Alignment:
| Q |
158 |
ttcaataataaaatgatacaaaacatcaaacccacatgtcaaatccatgactaagattcaaaaatgttcaaatataataatcattcaaaacagtgaagcc |
257 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
11932371 |
ttcaataattaaacgatacaaaacatcaaacccacatgtcaaatccatgactaagattctaaaatgttcaaatataataatcactcaaaatagtgaagcc |
11932470 |
T |
|
| Q |
258 |
ctaaaacctaaagtatacttattcataggcccatgggtgttcgctacgaatttcctcctcttcctgtggactgta |
332 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
11932471 |
ctaaaacctaaaatatacttattcataggcccatgggtgttcgctacgaatttcctcctcttcctgcggactgta |
11932545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University