View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11089_low_28 (Length: 354)
Name: NF11089_low_28
Description: NF11089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11089_low_28 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 141992 - 141646
Alignment:
| Q |
1 |
aaactttggaggatgaaatatatctcaatcatataaaaataaatataaataacttgaaaactcataagggagagttacacggaacttacaagtcttgaaa |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
141992 |
aaactttgaaggatgaaatatatctcaatcatataaaaataaatataaataacttgaaaactcacaagggagagttacacggaacttacaagtcttgaaa |
141893 |
T |
|
| Q |
101 |
gaaggtggaaaacagagaagagatccaaatgcnnnnnnngaactaaaaaatttgttaggttttgagagtaacaagagttgttggtggtaataaataatta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
141892 |
gaaggtggaaaacagagaagagatccaaatgcaaaaaa-gaactaaaaaatttgttaggttttgagagtaacaagagttgttggtggtaataaataatta |
141794 |
T |
|
| Q |
201 |
cctagaatggtttatggttacatgagtttgaaagggaccaaacctacctatttcatatagaataaatatgttacattgatatttgtgtaatgtgatatga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
141793 |
cctagaatggtttatggttacatgagtttgaaagggaccaaacctacctatttcatatagaataaatatgttacattgatatttgtgtaatgtgatatga |
141694 |
T |
|
| Q |
301 |
atgaatttttcttttgattctctctttgtctgtttgtgctctctgctt |
348 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
141693 |
atgaattttgattttgattctctctttgtctgtttgtgctctctgctt |
141646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University