View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11089_low_30 (Length: 354)
Name: NF11089_low_30
Description: NF11089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11089_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 16 - 346
Target Start/End: Original strand, 39331952 - 39332284
Alignment:
| Q |
16 |
ttgtggactctaatgacctctcctacagagattaatcttatcttatcttatttaatataaatctaagatagtctgatag----gaggaaatccctaaccc |
111 |
Q |
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| T |
39331952 |
ttgtggactctaatgacctctcctacagagattaatcttatcttatcttacttaatataaatctaaggtagtctgatagctaggaggaaatccctaaccc |
39332051 |
T |
|
| Q |
112 |
taatgacaaccctaataccttatttccctccaaaatcatgacataaatgcagtttaattactctgacccaccaactaatttcacacgtttttcttaactt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || |
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| T |
39332052 |
taatgacaaccctaataccttatttccctccaaaatcatgacataaatgcagtttaattactctgacccaccaactaatttcacacgtttttttgagttt |
39332151 |
T |
|
| Q |
212 |
tgagccactcaataaacgcttctcaatgcatagaagaaagttatttagagactttttaggattctgcttgccactcacactcaagaaatcatctaaaacg |
311 |
Q |
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||| |||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
39332152 |
tgaaccactcaatacacgcttctcaatgcatagaagaaagttatttggagactttctaggattcagcttgccactcacactcaag--atcatctaaaacg |
39332249 |
T |
|
| Q |
312 |
tctannnnnnncttcctggtcgatccatttcttct |
346 |
Q |
| |
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|||| ||||||||||| |||||||||||| |
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| T |
39332250 |
tctatttttttcttcctggtcggtccatttcttct |
39332284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 54 - 266
Target Start/End: Complemental strand, 22308935 - 22308723
Alignment:
| Q |
54 |
tatcttatcttatttaatataaatctaagatagtctgataggaggaaatccctaaccctaatgacaaccctaataccttatttccctccaaaatcatgac |
153 |
Q |
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| T |
22308935 |
tatcttatcttatttaatattaatctaagatagtctgatatgaggaaatctctaaccctaatgacaaccctaatatcttattttcctcccaaatcatgac |
22308836 |
T |
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| Q |
154 |
ataaatgcagtttaattactctgacccaccaactaatttcacacgtttttcttaactttgagccactcaataaacgcttctcaatgcatagaagaaagtt |
253 |
Q |
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||||||| || |||| ||||||||||||| || ||||||||||||||||||||| | ||||||||||||||| |||| |||||||||||||||||| | |
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| T |
22308835 |
ataaatggagcttaactactctgacccactaattaatttcacacgtttttcttagccttgagccactcaatatgcgctgctcaatgcatagaagaaaata |
22308736 |
T |
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| Q |
254 |
atttagagacttt |
266 |
Q |
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|||| |||||||| |
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| T |
22308735 |
atttggagacttt |
22308723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 106 - 137
Target Start/End: Complemental strand, 37469277 - 37469246
Alignment:
| Q |
106 |
taaccctaatgacaaccctaataccttatttc |
137 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
37469277 |
taaccctaatgacaaccctaataccttatttc |
37469246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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