View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11089_low_37 (Length: 326)

Name: NF11089_low_37
Description: NF11089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11089_low_37
NF11089_low_37
[»] chr5 (23 HSPs)
chr5 (99-308)||(7058217-7058426)
chr5 (28-98)||(40584215-40584287)
chr5 (33-98)||(42225772-42225837)
chr5 (29-97)||(8009904-8009974)
chr5 (52-98)||(31748336-31748382)
chr5 (52-98)||(22098255-22098301)
chr5 (52-96)||(14321980-14322024)
chr5 (59-98)||(1107981-1108020)
chr5 (44-99)||(2629817-2629872)
chr5 (51-94)||(17574116-17574159)
chr5 (52-98)||(1293111-1293157)
chr5 (44-98)||(4800519-4800573)
chr5 (60-98)||(7077375-7077413)
chr5 (44-98)||(8728598-8728652)
chr5 (52-98)||(18695318-18695364)
chr5 (60-98)||(29803225-29803263)
chr5 (60-98)||(33393634-33393672)
chr5 (60-98)||(34428160-34428198)
chr5 (53-98)||(32872924-32872969)
chr5 (51-92)||(37821035-37821076)
chr5 (61-98)||(38919863-38919900)
chr5 (58-98)||(8959160-8959200)
chr5 (58-98)||(14914372-14914412)
[»] chr4 (42 HSPs)
chr4 (21-98)||(8810571-8810650)
chr4 (52-102)||(10250541-10250590)
chr4 (60-98)||(12241058-12241096)
chr4 (60-98)||(25523231-25523269)
chr4 (60-98)||(33820369-33820407)
chr4 (52-98)||(42815404-42815450)
chr4 (41-98)||(43871090-43871147)
chr4 (40-95)||(13140314-13140369)
chr4 (30-98)||(24045244-24045314)
chr4 (59-98)||(32696821-32696860)
chr4 (31-98)||(37997256-37997322)
chr4 (59-98)||(43511679-43511718)
chr4 (60-98)||(1562569-1562607)
chr4 (60-98)||(3968885-3968923)
chr4 (60-98)||(4949267-4949305)
chr4 (52-98)||(20760255-20760301)
chr4 (52-98)||(20766646-20766692)
chr4 (60-98)||(35017153-35017191)
chr4 (72-110)||(40629385-40629423)
chr4 (60-98)||(42853939-42853977)
chr4 (60-98)||(44272843-44272881)
chr4 (60-98)||(47014939-47014977)
chr4 (52-98)||(47015007-47015053)
chr4 (51-101)||(49371074-49371124)
chr4 (52-98)||(50890099-50890144)
chr4 (61-98)||(4974111-4974148)
chr4 (61-98)||(27384187-27384224)
chr4 (61-98)||(31413809-31413846)
chr4 (61-98)||(33093138-33093175)
chr4 (61-98)||(36871191-36871228)
chr4 (52-101)||(46665220-46665269)
chr4 (62-98)||(6290462-6290498)
chr4 (70-98)||(9472556-9472584)
chr4 (72-100)||(9776377-9776405)
chr4 (60-96)||(29525860-29525896)
chr4 (58-98)||(35824137-35824177)
chr4 (58-98)||(36812434-36812474)
chr4 (60-108)||(39010170-39010218)
chr4 (58-98)||(41495013-41495053)
chr4 (58-98)||(43358613-43358653)
chr4 (60-100)||(46794534-46794574)
chr4 (59-103)||(51359822-51359866)
[»] chr8 (27 HSPs)
chr8 (29-98)||(1248253-1248322)
chr8 (21-95)||(45253600-45253676)
chr8 (29-98)||(11584096-11584167)
chr8 (44-98)||(999275-999329)
chr8 (35-98)||(42786668-42786731)
chr8 (52-98)||(67186-67232)
chr8 (52-98)||(6440081-6440127)
chr8 (52-98)||(25830271-25830317)
chr8 (61-98)||(14233667-14233704)
chr8 (44-97)||(37663709-37663762)
chr8 (51-94)||(1422594-1422637)
chr8 (51-94)||(18550115-18550158)
chr8 (35-98)||(36969685-36969748)
chr8 (52-98)||(10644827-10644873)
chr8 (60-98)||(22767132-22767170)
chr8 (52-98)||(25987812-25987858)
chr8 (44-98)||(26629127-26629181)
chr8 (52-94)||(33511738-33511780)
chr8 (60-98)||(36497661-36497699)
chr8 (52-101)||(3270904-3270953)
chr8 (33-94)||(21514943-21515004)
chr8 (60-97)||(34494671-34494708)
chr8 (60-101)||(40604737-40604778)
chr8 (61-98)||(41776186-41776223)
chr8 (53-98)||(42620003-42620048)
chr8 (51-99)||(102343-102391)
chr8 (58-98)||(35937543-35937583)
[»] chr2 (32 HSPs)
chr2 (28-98)||(44996545-44996617)
chr2 (35-98)||(14871640-14871703)
chr2 (35-97)||(14876707-14876769)
chr2 (52-98)||(6336252-6336298)
chr2 (44-94)||(28508483-28508533)
chr2 (44-98)||(31629604-31629658)
chr2 (44-98)||(45376238-45376292)
chr2 (52-103)||(14328376-14328427)
chr2 (59-98)||(22303203-22303242)
chr2 (59-98)||(28277799-28277838)
chr2 (60-99)||(31635843-31635882)
chr2 (30-98)||(44050015-44050085)
chr2 (52-98)||(5031923-5031969)
chr2 (60-98)||(6666020-6666058)
chr2 (60-98)||(7498024-7498062)
chr2 (60-98)||(11980651-11980689)
chr2 (44-98)||(25507255-25507309)
chr2 (40-98)||(28481781-28481839)
chr2 (52-98)||(28494859-28494905)
chr2 (44-98)||(28544031-28544085)
chr2 (52-94)||(35518412-35518454)
chr2 (59-97)||(39147766-39147804)
chr2 (51-93)||(43515027-43515069)
chr2 (61-98)||(4138208-4138245)
chr2 (35-100)||(9990689-9990753)
chr2 (53-98)||(14255302-14255347)
chr2 (53-98)||(30220836-30220881)
chr2 (58-103)||(36909874-36909919)
chr2 (61-98)||(45202155-45202192)
chr2 (59-95)||(3366429-3366465)
chr2 (70-98)||(23045093-23045121)
chr2 (58-98)||(39737717-39737757)
[»] chr6 (17 HSPs)
chr6 (18-98)||(20545501-20545581)
chr6 (35-98)||(1376364-1376427)
chr6 (35-98)||(1384112-1384175)
chr6 (59-98)||(27334858-27334897)
chr6 (59-98)||(27395598-27395637)
chr6 (40-98)||(8098609-8098666)
chr6 (60-102)||(10557405-10557447)
chr6 (44-94)||(10840722-10840772)
chr6 (60-98)||(12280440-12280478)
chr6 (60-98)||(15666806-15666844)
chr6 (60-98)||(19789109-19789147)
chr6 (60-98)||(28965873-28965911)
chr6 (60-98)||(32729889-32729927)
chr6 (60-98)||(32784738-32784776)
chr6 (61-98)||(9395360-9395397)
chr6 (33-94)||(28982645-28982706)
chr6 (61-98)||(32644623-32644660)
[»] chr3 (36 HSPs)
chr3 (21-98)||(5393826-5393905)
chr3 (22-98)||(23377982-23378060)
chr3 (30-94)||(39629840-39629906)
chr3 (31-98)||(44813450-44813517)
chr3 (52-98)||(37894268-37894314)
chr3 (60-98)||(40159871-40159909)
chr3 (53-98)||(50559238-50559283)
chr3 (60-96)||(47988518-47988554)
chr3 (60-96)||(47997805-47997841)
chr3 (60-96)||(48007092-48007128)
chr3 (29-98)||(48309841-48309912)
chr3 (40-99)||(23553602-23553661)
chr3 (52-111)||(29573381-29573440)
chr3 (43-98)||(41637296-41637351)
chr3 (59-98)||(48944742-48944781)
chr3 (59-98)||(54233500-54233539)
chr3 (60-98)||(7867744-7867782)
chr3 (60-98)||(11335335-11335373)
chr3 (44-98)||(41448193-41448247)
chr3 (60-98)||(45528975-45529013)
chr3 (60-98)||(51032657-51032695)
chr3 (52-98)||(51137061-51137107)
chr3 (40-98)||(52939653-52939710)
chr3 (60-98)||(54134852-54134890)
chr3 (53-98)||(6178452-6178496)
chr3 (59-96)||(25595942-25595979)
chr3 (33-102)||(31425530-31425599)
chr3 (61-98)||(35368622-35368659)
chr3 (40-97)||(42357094-42357150)
chr3 (45-94)||(47683920-47683969)
chr3 (53-98)||(52963342-52963387)
chr3 (58-98)||(7245-7285)
chr3 (58-98)||(1295332-1295372)
chr3 (59-99)||(14839077-14839117)
chr3 (70-98)||(48179096-48179124)
chr3 (58-98)||(50652388-50652428)
[»] chr1 (23 HSPs)
chr1 (28-98)||(35848412-35848484)
chr1 (51-94)||(37947112-37947155)
chr1 (60-97)||(15182616-15182653)
chr1 (54-98)||(740983-741027)
chr1 (51-95)||(48336346-48336390)
chr1 (52-99)||(649767-649814)
chr1 (59-98)||(12999854-12999893)
chr1 (35-98)||(21433409-21433472)
chr1 (60-99)||(33076118-33076157)
chr1 (60-99)||(50141968-50142007)
chr1 (52-98)||(1689391-1689437)
chr1 (52-98)||(11947795-11947841)
chr1 (60-98)||(16263425-16263463)
chr1 (60-98)||(18541084-18541122)
chr1 (60-98)||(18610773-18610811)
chr1 (60-98)||(45042261-45042299)
chr1 (51-93)||(48634367-48634409)
chr1 (60-98)||(50017456-50017494)
chr1 (31-64)||(38965512-38965545)
chr1 (61-98)||(41425242-41425279)
chr1 (53-98)||(49020430-49020475)
chr1 (59-103)||(22674707-22674751)
chr1 (59-99)||(23472107-23472147)
[»] chr7 (24 HSPs)
chr7 (21-98)||(24680961-24681040)
chr7 (59-98)||(26153646-26153685)
chr7 (59-98)||(27704435-27704474)
chr7 (59-98)||(28548253-28548292)
chr7 (59-98)||(37969931-37969970)
chr7 (59-98)||(40207832-40207871)
chr7 (60-95)||(42640846-42640881)
chr7 (60-98)||(6822555-6822593)
chr7 (60-98)||(30391159-30391197)
chr7 (63-101)||(37832447-37832485)
chr7 (60-98)||(40693561-40693599)
chr7 (60-98)||(42276091-42276129)
chr7 (52-98)||(42584802-42584848)
chr7 (61-98)||(19510380-19510417)
chr7 (61-98)||(23389627-23389664)
chr7 (53-98)||(34108881-34108926)
chr7 (52-97)||(44496828-44496873)
chr7 (59-103)||(11789723-11789767)
chr7 (53-97)||(23910277-23910321)
chr7 (52-92)||(27704572-27704612)
chr7 (53-97)||(30818023-30818067)
chr7 (52-100)||(30941384-30941431)
chr7 (59-95)||(37385265-37385301)
chr7 (61-97)||(38547313-38547349)
[»] scaffold0016 (1 HSPs)
scaffold0016 (31-98)||(204450-204516)
[»] scaffold0154 (1 HSPs)
scaffold0154 (60-101)||(19724-19765)
[»] scaffold0003 (3 HSPs)
scaffold0003 (59-98)||(337118-337157)
scaffold0003 (21-95)||(324045-324121)
scaffold0003 (52-100)||(366292-366339)
[»] scaffold0662 (2 HSPs)
scaffold0662 (60-98)||(1078-1116)
scaffold0662 (52-98)||(1146-1192)
[»] scaffold0024 (1 HSPs)
scaffold0024 (60-98)||(60469-60507)
[»] scaffold0020 (1 HSPs)
scaffold0020 (60-98)||(155906-155944)
[»] scaffold0184 (1 HSPs)
scaffold0184 (60-101)||(16627-16668)
[»] scaffold0078 (1 HSPs)
scaffold0078 (60-101)||(56176-56217)
[»] scaffold0067 (1 HSPs)
scaffold0067 (40-97)||(35524-35580)


Alignment Details
Target: chr5 (Bit Score: 174; Significance: 1e-93; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 99 - 308
Target Start/End: Original strand, 7058217 - 7058426
Alignment:
Q  99 catatcaaaagggcttgtattnnnnnnnnttgcaaaattttgataagaaccatcatttatttaaattgtaaataatatcaataacacgtacaaaaaatag 198  Q
    |||||||||||||||||||||        |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7058217 catatcaaaagggcttgtattaacaaaagttgcaaaattttgataagaaccgtcatttatttaaattgtaaataatatcaataacacgtacaaaaaatag 7058316  T
Q  199 ggcatcgaggaggttaaactttatatatttttaacatcctcattgttaaaagattgtttatttggtcaattggcttacaacttaaatcttgtcatcccta 298  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  7058317 ggcatcgaggaggttaaactttatatatttttaacatccttattgttaaaagattgtttatttggtcaattggcttacaacttaaatcttgtcatcgcta 7058416  T
Q  299 ttaaacgttt 308  Q
    ||||||||||    
T  7058417 ttaaacgttt 7058426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 40584215 - 40584287
Alignment:
Q  28 ggcataatgagtgtatgagagaggg--ttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||||||||||||||||| |  |||||||||||||||||| |||||||||||| ||||||||||||||    
T  40584215 ggcataatgagtgtatgagagagagagttgtcccaaaagttgtaaaaaaatagttgtagaaatatcatttctc 40584287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 33 - 98
Target Start/End: Original strand, 42225772 - 42225837
Alignment:
Q  33 aatgagtgtatgagagagggttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||| ||||||||||| ||||||||||||||||| | ||||| ||| |||||||||||||||||    
T  42225772 aatgagagtatgagagagagttgtcccaaaagttgttacaaaatggttttacaaatatcatttctc 42225837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 97
Target Start/End: Complemental strand, 8009974 - 8009904
Alignment:
Q  29 gcataatgagtgtatgagagag--ggttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttct 97  Q
    ||||||| | ||||||||||||  |||| ||||||||||||||||||||| |||||| |||||||||||||    
T  8009974 gcataataaatgtatgagagagaaggttatcccaaaagttgtaagaaaatggttgtataaatatcatttct 8009904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 31748382 - 31748336
Alignment:
Q  52 gttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||| |||||||||||| |||||||||||||||||||||||||||    
T  31748382 gttgtcacaaaagttgtaaaaaaatagttgtacaaatatcatttctc 31748336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 22098301 - 22098255
Alignment:
Q  52 gttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||| |||||||||| ||||||| |||||||||||||||||||||    
T  22098301 gttgtcacaaaagttgttagaaaatggttgtacaaatatcatttctc 22098255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 14321980 - 14322024
Alignment:
Q  52 gttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttc 96  Q
    |||||| |||||||||| ||||||| |||||||||||||||||||    
T  14321980 gttgtcacaaaagttgttagaaaatggttgtacaaatatcatttc 14322024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 59 - 98
Target Start/End: Complemental strand, 1108020 - 1107981
Alignment:
Q  59 caaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||||||||| |||||||| ||||||||||||||||||    
T  1108020 caaaagttgtaacaaaatagtcgtacaaatatcatttctc 1107981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 99
Target Start/End: Complemental strand, 2629872 - 2629817
Alignment:
Q  44 gagagagggttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctcc 99  Q
    |||||| ||||||  |||||||||| | ||||| ||||||||||||||||||||||    
T  2629872 gagagaaggttgtttcaaaagttgtcaaaaaatggttgtacaaatatcatttctcc 2629817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 94
Target Start/End: Complemental strand, 17574159 - 17574116
Alignment:
Q  51 ggttgtcccaaaagttgtaagaaaatagttgtacaaatatcatt 94  Q
    |||||||||||||||||||  ||||||||||| |||||||||||    
T  17574159 ggttgtcccaaaagttgtaccaaaatagttgttcaaatatcatt 17574116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 98
Target Start/End: Original strand, 1293111 - 1293157
Alignment:
Q  52 gttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||| |||||||||| | ||||| |||||||||||||||||||||    
T  1293111 gttgtcacaaaagttgttaaaaaatggttgtacaaatatcatttctc 1293157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 98
Target Start/End: Original strand, 4800519 - 4800573
Alignment:
Q  44 gagagagggttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||| ||||| ||||||||||| | ||| |||||||| ||||||||||||||    
T  4800519 gagagagagttgttccaaaagttgtcaaaaagtagttgtataaatatcatttctc 4800573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 98
Target Start/End: Original strand, 7077375 - 7077413
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  7077375 aaaagttgtaacaaaatggttgtacaaatatcatttctc 7077413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 98
Target Start/End: Original strand, 8728598 - 8728652
Alignment:
Q  44 gagagagggttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||||||||||  |||||||||| | ||| | |||||||||||||||||||||    
T  8728598 gagagagggttgtttcaaaagttgtcaaaaagtggttgtacaaatatcatttctc 8728652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 18695364 - 18695318
Alignment:
Q  52 gttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||| |||||||||| | ||||| |||||||||||||||||||||    
T  18695364 gttgtcacaaaagttgttacaaaatggttgtacaaatatcatttctc 18695318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 98
Target Start/End: Complemental strand, 29803263 - 29803225
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  29803263 aaaagttgtcaaaaaatagttgtacaaatatcatttctc 29803225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 98
Target Start/End: Complemental strand, 33393672 - 33393634
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||| ||||||| |||||||||||||||||||||    
T  33393672 aaaagttgtgagaaaatggttgtacaaatatcatttctc 33393634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 98
Target Start/End: Complemental strand, 34428198 - 34428160
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  34428198 aaaagttgtcaaaaaatagttgtacaaatatcatttctc 34428160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 32872924 - 32872969
Alignment:
Q  53 ttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||| |||||||||| | ||||||||||| |||||||||||||||    
T  32872924 ttgtcacaaaagttgtcaaaaaatagttgttcaaatatcatttctc 32872969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 92
Target Start/End: Complemental strand, 37821076 - 37821035
Alignment:
Q  51 ggttgtcccaaaagttgtaagaaaatagttgtacaaatatca 92  Q
    |||||||||||||||||||  ||||||||||| |||||||||    
T  37821076 ggttgtcccaaaagttgtaccaaaatagttgttcaaatatca 37821035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 98
Target Start/End: Complemental strand, 38919900 - 38919863
Alignment:
Q  61 aaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||||||  |||||||||||||||||||||||||||    
T  38919900 aaagttgtacaaaaatagttgtacaaatatcatttctc 38919863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 8959200 - 8959160
Alignment:
Q  58 ccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||||| | | |||||||||||||||||||||||||    
T  8959200 ccaaaagttgtcacataatagttgtacaaatatcatttctc 8959160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 14914412 - 14914372
Alignment:
Q  58 ccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||||| | ||||| |||||||||||||||||||||    
T  14914412 ccaaaagttgtcacaaaatggttgtacaaatatcatttctc 14914372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 9e-24; HSPs: 42)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 21 - 98
Target Start/End: Complemental strand, 8810650 - 8810571
Alignment:
Q  21 aagcaaaggcataatgagtgtatgagagag--ggttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||| | |||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||||    
T  8810650 aagcaaggacataatgagtgtatgagagagagggttgtcccaaaagttgtaagaaaatggttgtacaaatatcatttctc 8810571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 10250541 - 10250590
Alignment:
Q  52 gttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctccata 102  Q
    |||||| |||||||||||| ||||||||||| |||||||||||||||||||    
T  10250541 gttgtcacaaaagttgtaa-aaaatagttgttcaaatatcatttctccata 10250590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 98
Target Start/End: Complemental strand, 12241096 - 12241058
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  12241096 aaaagttgttagaaaatagttgtacaaatatcatttctc 12241058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 98
Target Start/End: Original strand, 25523231 - 25523269
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  25523231 aaaagttgtgagaaaatagttgtacaaatatcatttctc 25523269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 98
Target Start/End: Original strand, 33820369 - 33820407
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  33820369 aaaagttgttagaaaatagttgtacaaatatcatttctc 33820407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 42815450 - 42815404
Alignment:
Q  52 gttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||| |||||||||| | |||||||||||||||||||||||||||    
T  42815450 gttgtcacaaaagttgttacaaaatagttgtacaaatatcatttctc 42815404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 43871090 - 43871147
Alignment:
Q  41 tatgagagagggttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||| ||||| |||||||||||||||||   |||| ||||||||||||||||||||||    
T  43871090 tatgcgagagagttgtcccaaaagttgttccaaaacagttgtacaaatatcatttctc 43871147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 40 - 95
Target Start/End: Original strand, 13140314 - 13140369
Alignment:
Q  40 gtatgagagagggttgtcccaaaagttgtaagaaaatagttgtacaaatatcattt 95  Q
    ||||||||||| |||||  |||||||||| | ||||||| ||||||||||||||||    
T  13140314 gtatgagagagagttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 13140369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 98
Target Start/End: Complemental strand, 24045314 - 24045244
Alignment:
Q  30 cataatgagtgtatgagagag--ggttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||| | |||||||||||  ||||||| |||||||||||| ||| | ||||| |||||||||||||||    
T  24045314 cataatgtgagtatgagagagaaggttgtcgcaaaagttgtaaaaaattggttgtgcaaatatcatttctc 24045244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 59 - 98
Target Start/End: Original strand, 32696821 - 32696860
Alignment:
Q  59 caaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||||||| ||||||| |||||||||||||||||||||    
T  32696821 caaaagttgttagaaaatggttgtacaaatatcatttctc 32696860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 37997322 - 37997256
Alignment:
Q  31 ataatgagtgtatgagagagggttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||| | ||||||||||  |||||| |||||||||||| ||||| ||||| |||||||||||||||    
T  37997322 ataatgtgagtatgagagaaagttgtcacaaaagttgtaa-aaaatggttgttcaaatatcatttctc 37997256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 59 - 98
Target Start/End: Original strand, 43511679 - 43511718
Alignment:
Q  59 caaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||||||||  |||||||||||||||||||||||||||    
T  43511679 caaaagttgtacaaaaatagttgtacaaatatcatttctc 43511718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 98
Target Start/End: Original strand, 1562569 - 1562607
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||| ||||||| |||||||||||||||||||||    
T  1562569 aaaagttgttagaaaatggttgtacaaatatcatttctc 1562607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 98
Target Start/End: Complemental strand, 3968923 - 3968885
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||| ||||||| |||||||||||||||||||||    
T  3968923 aaaagttgttagaaaatggttgtacaaatatcatttctc 3968885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 98
Target Start/End: Original strand, 4949267 - 4949305
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  4949267 aaaagttgtaccaaaatagttgtacaaatatcatttctc 4949305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 20760301 - 20760255
Alignment:
Q  52 gttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||| |||||||||| | |||||| ||||||||||||||||||||    
T  20760301 gttgtcacaaaagttgttaaaaaataattgtacaaatatcatttctc 20760255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 20766692 - 20766646
Alignment:
Q  52 gttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||| |||||||||| | |||||| ||||||||||||||||||||    
T  20766692 gttgtcacaaaagttgttaaaaaataattgtacaaatatcatttctc 20766646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 98
Target Start/End: Complemental strand, 35017191 - 35017153
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  35017191 aaaagttgtcacaaaatagttgtacaaatatcatttctc 35017153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 110
Target Start/End: Original strand, 40629385 - 40629423
Alignment:
Q  72 aaaatagttgtacaaatatcatttctccatatcaaaagg 110  Q
    ||||||||||||||||||||||||||| |||| ||||||    
T  40629385 aaaatagttgtacaaatatcatttctctatattaaaagg 40629423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 98
Target Start/End: Complemental strand, 42853977 - 42853939
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  42853977 aaaagttgtcaaaaaatagttgtacaaatatcatttctc 42853939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 98
Target Start/End: Original strand, 44272843 - 44272881
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  44272843 aaaagttgtcaaaaaatagttgtacaaatatcatttctc 44272881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 98
Target Start/End: Complemental strand, 47014977 - 47014939
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  47014977 aaaagttgtcacaaaatagttgtacaaatatcatttctc 47014939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 47015053 - 47015007
Alignment:
Q  52 gttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||| |||||||||| || ||||| ||||||||||||||||||||    
T  47015053 gttgtcacaaaagttgttaggaaataattgtacaaatatcatttctc 47015007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 101
Target Start/End: Original strand, 49371074 - 49371124
Alignment:
Q  51 ggttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctccat 101  Q
    |||||||||||||||||| | || || ||||||||||||||||| ||||||    
T  49371074 ggttgtcccaaaagttgtcataacatggttgtacaaatatcattactccat 49371124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 98
Target Start/End: Original strand, 50890099 - 50890144
Alignment:
Q  52 gttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||| |||||||||| | |||||||||||||||||||||||||||    
T  50890099 gttgtcacaaaagttgtca-aaaatagttgtacaaatatcatttctc 50890144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 98
Target Start/End: Complemental strand, 4974148 - 4974111
Alignment:
Q  61 aaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||||| | |||||||||||||||||||||||||||    
T  4974148 aaagttgttaaaaaatagttgtacaaatatcatttctc 4974111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 98
Target Start/End: Complemental strand, 27384224 - 27384187
Alignment:
Q  61 aaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  27384224 aaagttgtaataaaatggttgtacaaatatcatttctc 27384187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 31413809 - 31413846
Alignment:
Q  61 aaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||||||  |||||||||||||||||||||||||||    
T  31413809 aaagttgtacaaaaatagttgtacaaatatcatttctc 31413846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 33093138 - 33093175
Alignment:
Q  61 aaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||||| | |||||||||||||||||||||||||||    
T  33093138 aaagttgtcacaaaatagttgtacaaatatcatttctc 33093175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 36871191 - 36871228
Alignment:
Q  61 aaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||||||  |||||||||||||||||||||||||||    
T  36871191 aaagttgtacaaaaatagttgtacaaatatcatttctc 36871228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 46665220 - 46665269
Alignment:
Q  52 gttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctccat 101  Q
    |||||| | ||||||||||| |||| | ||||||||||||||||||||||    
T  46665220 gttgtcacgaaagttgtaaggaaatgggtgtacaaatatcatttctccat 46665269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 98
Target Start/End: Complemental strand, 6290498 - 6290462
Alignment:
Q  62 aagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||| | |||||||||||||||||||||||||||    
T  6290498 aagttgttacaaaatagttgtacaaatatcatttctc 6290462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 98
Target Start/End: Original strand, 9472556 - 9472584
Alignment:
Q  70 agaaaatagttgtacaaatatcatttctc 98  Q
    |||||||||||||||||||||||||||||    
T  9472556 agaaaatagttgtacaaatatcatttctc 9472584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 100
Target Start/End: Original strand, 9776377 - 9776405
Alignment:
Q  72 aaaatagttgtacaaatatcatttctcca 100  Q
    |||||||||||||||||||||||||||||    
T  9776377 aaaatagttgtacaaatatcatttctcca 9776405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 29525896 - 29525860
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcatttc 96  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  29525896 aaaagttgtaataaaatggttgtacaaatatcatttc 29525860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 98
Target Start/End: Original strand, 35824137 - 35824177
Alignment:
Q  58 ccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||||| | ||||| |||||||||||||||||||||    
T  35824137 ccaaaagttgttaaaaaatggttgtacaaatatcatttctc 35824177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 98
Target Start/End: Original strand, 36812434 - 36812474
Alignment:
Q  58 ccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||||| ||||| | |||||||||||||||||||||    
T  36812434 ccaaaagttgttagaaattggttgtacaaatatcatttctc 36812474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 39010170 - 39010218
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcatttctccatatcaaaa 108  Q
    ||||||||| | ||||| ||||||||||||||||||||| |||| ||||    
T  39010170 aaaagttgtcacaaaatggttgtacaaatatcatttctcaatatgaaaa 39010218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 41495053 - 41495013
Alignment:
Q  58 ccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||||| | | |||||||||||||||||||||||||    
T  41495053 ccaaaagttgtcacataatagttgtacaaatatcatttctc 41495013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 43358653 - 43358613
Alignment:
Q  58 ccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||||| ||||| | |||||||||||||||||||||    
T  43358653 ccaaaagttgttagaaattggttgtacaaatatcatttctc 43358613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 100
Target Start/End: Original strand, 46794534 - 46794574
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcatttctcca 100  Q
    ||||||||| ||||| | |||||||||||||||||||||||    
T  46794534 aaaagttgtcagaaagtggttgtacaaatatcatttctcca 46794574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 51359822 - 51359866
Alignment:
Q  59 caaaagttgtaagaaaatagttgtacaaatatcatttctccatat 103  Q
    |||||||||| | ||||| ||||||||||||||||||||| ||||    
T  51359822 caaaagttgtcacaaaatggttgtacaaatatcatttctctatat 51359866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 1248322 - 1248253
Alignment:
Q  29 gcataatgagtgtatgagagagggttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||||||||||| | ||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  1248322 gcataatgagtgtatgaaaaaggattgtcccaaaagttgtaagaaaatggttgtacaaatatcatttctc 1248253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 95
Target Start/End: Original strand, 45253600 - 45253676
Alignment:
Q  21 aagcaaaggcataatgagtgtatgagaga--gggttgtcccaaaagttgtaagaaaatagttgtacaaatatcattt 95  Q
    |||||| |||||||||| | ||||||| |  ||||||||||||||||||||||||||| ||||||||||||||||||    
T  45253600 aagcaagggcataatgactctatgagataaagggttgtcccaaaagttgtaagaaaatggttgtacaaatatcattt 45253676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 11584167 - 11584096
Alignment:
Q  29 gcataatgagtgtatgagaga--gggttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||||||||||| |||  |||||||| ||||| |||||||||||| |||||||||||||||||||||    
T  11584167 gcataatgagtgtatgaaagatagggttgtctcaaaaattgtaagaaaatggttgtacaaatatcatttctc 11584096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 44 - 98
Target Start/End: Original strand, 999275 - 999329
Alignment:
Q  44 gagagagggttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||||||| ||||||||| || ||||||||| |||||||||||||||||||||    
T  999275 gagagagggtagtcccaaaaattataagaaaatggttgtacaaatatcatttctc 999329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 98
Target Start/End: Original strand, 42786668 - 42786731
Alignment:
Q  35 tgagtgtatgagagagggttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||| || ||||||  |||||| ||||| |||||||||||| |||||||||||||||||||||    
T  42786668 tgagtataagagagaaagttgtcacaaaaattgtaagaaaatggttgtacaaatatcatttctc 42786731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 98
Target Start/End: Original strand, 67186 - 67232
Alignment:
Q  52 gttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||| |||||||||| ||||||| |||||||||||||||||||||    
T  67186 gttgtcacaaaagttgttagaaaatggttgtacaaatatcatttctc 67232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 6440127 - 6440081
Alignment:
Q  52 gttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||| ||||||||||||  ||||||||||||||||||||||||||    
T  6440127 gttgtcacaaaagttgtaaagaaatagttgtacaaatatcatttctc 6440081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 98
Target Start/End: Original strand, 25830271 - 25830317
Alignment:
Q  52 gttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||| |||||||||| ||||||| |||||||||||||||||||||    
T  25830271 gttgtcacaaaagttgttagaaaatggttgtacaaatatcatttctc 25830317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 14233667 - 14233704
Alignment:
Q  61 aaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||||||| |||||||||||||||||||||||||||    
T  14233667 aaagttgtaaaaaaatagttgtacaaatatcatttctc 14233704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 44 - 97
Target Start/End: Original strand, 37663709 - 37663762
Alignment:
Q  44 gagagagggttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttct 97  Q
    ||||||||||||||| |||| |||||| ||||| |||||||||| |||||||||    
T  37663709 gagagagggttgtcctaaaaattgtaacaaaatggttgtacaaagatcatttct 37663762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 94
Target Start/End: Complemental strand, 1422637 - 1422594
Alignment:
Q  51 ggttgtcccaaaagttgtaagaaaatagttgtacaaatatcatt 94  Q
    |||||||||||||||||||  ||||||||||| |||||||||||    
T  1422637 ggttgtcccaaaagttgtatcaaaatagttgttcaaatatcatt 1422594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 94
Target Start/End: Original strand, 18550115 - 18550158
Alignment:
Q  51 ggttgtcccaaaagttgtaagaaaatagttgtacaaatatcatt 94  Q
    |||||||||||||||||||  ||||||||||| |||||||||||    
T  18550115 ggttgtcccaaaagttgtaccaaaatagttgttcaaatatcatt 18550158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 98
Target Start/End: Original strand, 36969685 - 36969748
Alignment:
Q  35 tgagtgtatgagagagggttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||| || ||||||  |||||| |||||||||||| ||||| ||| |||||||||||||||||    
T  36969685 tgagtataagagagatagttgtcacaaaagttgtaataaaattgttttacaaatatcatttctc 36969748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 98
Target Start/End: Original strand, 10644827 - 10644873
Alignment:
Q  52 gttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||| |||||||||| | ||||| |||||||||||||||||||||    
T  10644827 gttgtcacaaaagttgttacaaaatggttgtacaaatatcatttctc 10644873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 98
Target Start/End: Complemental strand, 22767170 - 22767132
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||| ||||||| |||||||||||||||||||||    
T  22767170 aaaagttgtgagaaaatggttgtacaaatatcatttctc 22767132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 98
Target Start/End: Original strand, 25987812 - 25987858
Alignment:
Q  52 gttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||| |||||||||||| ||||| ||||| |||||||||||||||    
T  25987812 gttgtcacaaaagttgtaaaaaaatggttgttcaaatatcatttctc 25987858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 98
Target Start/End: Original strand, 26629127 - 26629181
Alignment:
Q  44 gagagagggttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||||||||||  |||||||||| | ||| | |||||||||||||||||||||    
T  26629127 gagagagggttgtttcaaaagttgtcaaaaagtggttgtacaaatatcatttctc 26629181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 94
Target Start/End: Original strand, 33511738 - 33511780
Alignment:
Q  52 gttgtcccaaaagttgtaagaaaatagttgtacaaatatcatt 94  Q
    ||||||||||||||| | | |||||||||||||||||||||||    
T  33511738 gttgtcccaaaagttttcacaaaatagttgtacaaatatcatt 33511780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 98
Target Start/End: Complemental strand, 36497699 - 36497661
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  36497699 aaaagttgtcacaaaatagttgtacaaatatcatttctc 36497661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 3270904 - 3270953
Alignment:
Q  52 gttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctccat 101  Q
    |||||| ||||||||||||| ||||  |||||||||||| ||||||||||    
T  3270904 gttgtcacaaaagttgtaaggaaatgattgtacaaatattatttctccat 3270953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 94
Target Start/End: Original strand, 21514943 - 21515004
Alignment:
Q  33 aatgagtgtatgagagagggttgtcccaaaagttgtaagaaaatagttgtacaaatatcatt 94  Q
    |||||| |||||||||||||||||| ||||| |||| | ||||| | ||| |||||||||||    
T  21514943 aatgagagtatgagagagggttgtcacaaaaattgttaaaaaatggatgttcaaatatcatt 21515004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 97
Target Start/End: Original strand, 34494671 - 34494708
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcatttct 97  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  34494671 aaaaattgttagaaaatagttgtacaaatatcatttct 34494708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 40604737 - 40604778
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcatttctccat 101  Q
    ||||||||| ||||||| |||||||| |||||||||||||||    
T  40604737 aaaagttgtcagaaaattgttgtacagatatcatttctccat 40604778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 98
Target Start/End: Complemental strand, 41776223 - 41776186
Alignment:
Q  61 aaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||||||  |||||||||||||||||||||||||||    
T  41776223 aaagttgtacaaaaatagttgtacaaatatcatttctc 41776186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 42620003 - 42620048
Alignment:
Q  53 ttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||| |||||||||| ||||||| | |||||||||||||||||||    
T  42620003 ttgtcacaaaagttgttagaaaatggatgtacaaatatcatttctc 42620048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 99
Target Start/End: Complemental strand, 102391 - 102343
Alignment:
Q  51 ggttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctcc 99  Q
    ||||| || ||||||||||| ||||| ||||||||||||||||| ||||    
T  102391 ggttggcctaaaagttgtaacaaaatggttgtacaaatatcattactcc 102343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 98
Target Start/End: Original strand, 35937543 - 35937583
Alignment:
Q  58 ccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||||| | ||||| |||||||||||||||||||||    
T  35937543 ccaaaagttgttacaaaatggttgtacaaatatcatttctc 35937583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 44996617 - 44996545
Alignment:
Q  28 ggcataatgagtgtatgagaga--gggttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  44996617 ggcataatgagtgtatgagagaaagggttgtcccaaaagttgtaagaaaatggttgtacaaataccatttctc 44996545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 98
Target Start/End: Complemental strand, 14871703 - 14871640
Alignment:
Q  35 tgagtgtatgagagagggttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||||||||||||  |||||  ||||| |||||||||||| |||||||||||||||||||||    
T  14871703 tgagtgtatgagagatagttgtttcaaaaattgtaagaaaatggttgtacaaatatcatttctc 14871640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 14876769 - 14876707
Alignment:
Q  35 tgagtgtatgagagagggttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttct 97  Q
    |||||||||||||||  |||||  ||||| |||||||||||| ||||||||||||||||||||    
T  14876769 tgagtgtatgagagatagttgtttcaaaaattgtaagaaaatggttgtacaaatatcatttct 14876707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 6336298 - 6336252
Alignment:
Q  52 gttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||| |||||||||| ||||||| |||||||||||||||||||||    
T  6336298 gttgtcacaaaagttgttagaaaatggttgtacaaatatcatttctc 6336252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 94
Target Start/End: Complemental strand, 28508533 - 28508483
Alignment:
Q  44 gagagagggttgtcccaaaagttgtaagaaaatagttgtacaaatatcatt 94  Q
    |||||| |||||||||||||||||| | ||||| |||||||||||||||||    
T  28508533 gagagaaggttgtcccaaaagttgtcacaaaatggttgtacaaatatcatt 28508483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 98
Target Start/End: Complemental strand, 31629658 - 31629604
Alignment:
Q  44 gagagagggttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||| |||||| ||||||||||| | ||| |||||||||||||||||||||||    
T  31629658 gagagatggttgttccaaaagttgtcaaaaagtagttgtacaaatatcatttctc 31629604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 98
Target Start/End: Original strand, 45376238 - 45376292
Alignment:
Q  44 gagagagggttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||||||||||| |||||||||| | ||| | |||||||||||||||||||||    
T  45376238 gagagagggttgtcacaaaagttgtcaaaaagtggttgtacaaatatcatttctc 45376292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 52 - 103
Target Start/End: Complemental strand, 14328427 - 14328376
Alignment:
Q  52 gttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctccatat 103  Q
    |||||| |||||||||| ||||||| |||||||| |||||||||||| ||||    
T  14328427 gttgtcacaaaagttgttagaaaattgttgtacatatatcatttctctatat 14328376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 59 - 98
Target Start/End: Complemental strand, 22303242 - 22303203
Alignment:
Q  59 caaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||||||| | |||||||||||||||||||||||||||    
T  22303242 caaaagttgtcaaaaaatagttgtacaaatatcatttctc 22303203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 59 - 98
Target Start/End: Original strand, 28277799 - 28277838
Alignment:
Q  59 caaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||||||| |||||||||||||| ||||||||||||||    
T  28277799 caaaagttgtcagaaaatagttgtataaatatcatttctc 28277838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 99
Target Start/End: Original strand, 31635843 - 31635882
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcatttctcc 99  Q
    ||||||||| ||||||| ||||||||||||||||||||||    
T  31635843 aaaagttgttagaaaatggttgtacaaatatcatttctcc 31635882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 98
Target Start/End: Complemental strand, 44050085 - 44050015
Alignment:
Q  30 cataatgagtgtatgagagag--ggttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||| | |||||||||||  ||||||| |||||||||| | ||||| ||||||||| |||||||||||    
T  44050085 cataatgtgagtatgagagagaaggttgtcacaaaagttgtcataaaatggttgtacaagtatcatttctc 44050015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 5031969 - 5031923
Alignment:
Q  52 gttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||| |||||||||| | ||||| |||||||||||||||||||||    
T  5031969 gttgtcgcaaaagttgttacaaaatggttgtacaaatatcatttctc 5031923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 98
Target Start/End: Complemental strand, 6666058 - 6666020
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  6666058 aaaagttgtaataaaatggttgtacaaatatcatttctc 6666020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 98
Target Start/End: Original strand, 7498024 - 7498062
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  7498024 aaaagttgtaataaaatggttgtacaaatatcatttctc 7498062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 98
Target Start/End: Complemental strand, 11980689 - 11980651
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||| ||||||| |||||||||||||||||||||    
T  11980689 aaaagttgttagaaaatggttgtacaaatatcatttctc 11980651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 98
Target Start/End: Complemental strand, 25507309 - 25507255
Alignment:
Q  44 gagagagggttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||||||||||  |||||||||| | ||| | |||||||||||||||||||||    
T  25507309 gagagagggttgtttcaaaagttgtcaaaaagtggttgtacaaatatcatttctc 25507255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 98
Target Start/End: Complemental strand, 28481839 - 28481781
Alignment:
Q  40 gtatgagagagggttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||||| ||||| ||||||||||| | ||||| ||||| ||||||| |||||||    
T  28481839 gtatgagagagagttgttccaaaagttgtcaaaaaatggttgttcaaatattatttctc 28481781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 28494905 - 28494859
Alignment:
Q  52 gttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||| |||||||||||   |||||||||||||||||||||||||||    
T  28494905 gttgttccaaaagttgtttaaaaatagttgtacaaatatcatttctc 28494859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 98
Target Start/End: Complemental strand, 28544085 - 28544031
Alignment:
Q  44 gagagagggttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||| ||||||| |||||||||| | ||||| || ||||||||||||||||||    
T  28544085 gagagatggttgtcacaaaagttgtgaaaaaatggtagtacaaatatcatttctc 28544031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 94
Target Start/End: Original strand, 35518412 - 35518454
Alignment:
Q  52 gttgtcccaaaagttgtaagaaaatagttgtacaaatatcatt 94  Q
    ||||||||||||||||||  ||||||||||| |||||||||||    
T  35518412 gttgtcccaaaagttgtatcaaaatagttgttcaaatatcatt 35518454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 97
Target Start/End: Complemental strand, 39147804 - 39147766
Alignment:
Q  59 caaaagttgtaagaaaatagttgtacaaatatcatttct 97  Q
    |||||||||||| ||||||||||||||| ||||||||||    
T  39147804 caaaagttgtaaaaaaatagttgtacaagtatcatttct 39147766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 93
Target Start/End: Original strand, 43515027 - 43515069
Alignment:
Q  51 ggttgtcccaaaagttgtaagaaaatagttgtacaaatatcat 93  Q
    |||||||||||||||||||| |||| |||||| ||||||||||    
T  43515027 ggttgtcccaaaagttgtaacaaaagagttgttcaaatatcat 43515069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 4138208 - 4138245
Alignment:
Q  61 aaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||||| ||||||||||| |||||||||||||||||    
T  4138208 aaagttgttagaaaatagttatacaaatatcatttctc 4138245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 100
Target Start/End: Complemental strand, 9990753 - 9990689
Alignment:
Q  35 tgagtgtatgagagagggttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctcca 100  Q
    ||||| || ||||||  |||||| |||||||||||| ||| ||||||| |||||||||||||||||    
T  9990753 tgagtataagagagaaagttgtcacaaaagttgtaa-aaattagttgttcaaatatcatttctcca 9990689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 14255347 - 14255302
Alignment:
Q  53 ttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||| |||||||||| | ||||||||||||||||||| |||||||    
T  14255347 ttgtcacaaaagttgtcataaaatagttgtacaaatattatttctc 14255302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 30220836 - 30220881
Alignment:
Q  53 ttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||||||||||| | | | |||||||||||||||||||||||||    
T  30220836 ttgtcccaaaagttatcacagaatagttgtacaaatatcatttctc 30220881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 36909874 - 36909919
Alignment:
Q  58 ccaaaagttgtaagaaaatagttgtacaaatatcatttctccatat 103  Q
    ||||||||||| | ||||| ||||||||||||||||||||| ||||    
T  36909874 ccaaaagttgtcacaaaatggttgtacaaatatcatttctctatat 36909919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 45202155 - 45202192
Alignment:
Q  61 aaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  45202155 aaagttgtaaaaaaatggttgtacaaatatcatttctc 45202192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 3366429 - 3366465
Alignment:
Q  59 caaaagttgtaagaaaatagttgtacaaatatcattt 95  Q
    |||||||||||| ||||||| ||||||||||||||||    
T  3366429 caaaagttgtaataaaatagatgtacaaatatcattt 3366465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 98
Target Start/End: Complemental strand, 23045121 - 23045093
Alignment:
Q  70 agaaaatagttgtacaaatatcatttctc 98  Q
    |||||||||||||||||||||||||||||    
T  23045121 agaaaatagttgtacaaatatcatttctc 23045093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 98
Target Start/End: Original strand, 39737717 - 39737757
Alignment:
Q  58 ccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||||| ||||| | |||||||||||||||||||||    
T  39737717 ccaaaagttgttagaaattggttgtacaaatatcatttctc 39737757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 20545581 - 20545501
Alignment:
Q  18 gagaagcaaaggcataatgagtgtatgagagagggttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||| ||| |||||||||||| ||||||||||||||||||||||| | |||||||||| ||||||||||||| |||||||    
T  20545581 gagaaacaagggcataatgagtatatgagagagggttgtcccaaaaatggtaagaaaatggttgtacaaatattatttctc 20545501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 98
Target Start/End: Complemental strand, 1376427 - 1376364
Alignment:
Q  35 tgagtgtatgagagagggttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||| || ||||||  |||||| |||||||||| ||||||| ||||||||||||| |||||||    
T  1376427 tgagtataagagagaaagttgtcacaaaagttgttagaaaatggttgtacaaatataatttctc 1376364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 98
Target Start/End: Complemental strand, 1384175 - 1384112
Alignment:
Q  35 tgagtgtatgagagagggttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||| || ||||||  |||||| |||||||||| ||||||| ||||||||||||| |||||||    
T  1384175 tgagtataagagagaaagttgtcacaaaagttgttagaaaatggttgtacaaatataatttctc 1384112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 59 - 98
Target Start/End: Complemental strand, 27334897 - 27334858
Alignment:
Q  59 caaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||||||| | |||||||||||||||||||||||||||    
T  27334897 caaaagttgtcacaaaatagttgtacaaatatcatttctc 27334858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 59 - 98
Target Start/End: Complemental strand, 27395637 - 27395598
Alignment:
Q  59 caaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||||||| | |||||||||||||||||||||||||||    
T  27395637 caaaagttgtcacaaaatagttgtacaaatatcatttctc 27395598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 98
Target Start/End: Original strand, 8098609 - 8098666
Alignment:
Q  40 gtatgagagagggttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||||  |||||| |||||||||||| ||||| ||||| |||||||||||||||    
T  8098609 gtatgagagaaagttgtcacaaaagttgtaa-aaaatggttgttcaaatatcatttctc 8098666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 102
Target Start/End: Complemental strand, 10557447 - 10557405
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcatttctccata 102  Q
    ||||||||||  ||||| |||||||||||||||||||||||||    
T  10557447 aaaagttgtataaaaatggttgtacaaatatcatttctccata 10557405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 94
Target Start/End: Complemental strand, 10840772 - 10840722
Alignment:
Q  44 gagagagggttgtcccaaaagttgtaagaaaatagttgtacaaatatcatt 94  Q
    |||||||| |||| ||||||||||| | |||||| ||||||||||||||||    
T  10840772 gagagaggattgttccaaaagttgtcaaaaaataattgtacaaatatcatt 10840722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 98
Target Start/End: Complemental strand, 12280478 - 12280440
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||| ||||||||||| |||||||||||||||||    
T  12280478 aaaagttgtcagaaaatagttatacaaatatcatttctc 12280440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 98
Target Start/End: Original strand, 15666806 - 15666844
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||| ||||||| |||||||||||||||||||||    
T  15666806 aaaagttgtcagaaaatggttgtacaaatatcatttctc 15666844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 98
Target Start/End: Original strand, 19789109 - 19789147
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  19789109 aaaagttgtaataaaatggttgtacaaatatcatttctc 19789147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 98
Target Start/End: Original strand, 28965873 - 28965911
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  28965873 aaaagttgtaacaaaatggttgtacaaatatcatttctc 28965911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 98
Target Start/End: Complemental strand, 32729927 - 32729889
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||| ||||||| |||||||||||||||||||||    
T  32729927 aaaagttgtcagaaaatggttgtacaaatatcatttctc 32729889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 98
Target Start/End: Complemental strand, 32784776 - 32784738
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  32784776 aaaagttgtaacaaaataattgtacaaatatcatttctc 32784738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 9395360 - 9395397
Alignment:
Q  61 aaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||||||  |||||||||||||||||||||||||||    
T  9395360 aaagttgtacaaaaatagttgtacaaatatcatttctc 9395397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 94
Target Start/End: Original strand, 28982645 - 28982706
Alignment:
Q  33 aatgagtgtatgagagagggttgtcccaaaagttgtaagaaaatagttgtacaaatatcatt 94  Q
    |||||| ||||||||||| |||||| |||||||||| | ||||| | ||| |||||||||||    
T  28982645 aatgagagtatgagagagagttgtcacaaaagttgttaaaaaatggatgttcaaatatcatt 28982706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 98
Target Start/End: Complemental strand, 32644660 - 32644623
Alignment:
Q  61 aaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||||| | |||||||||||||||||||||||||||    
T  32644660 aaagttgtcaaaaaatagttgtacaaatatcatttctc 32644623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 5393826 - 5393905
Alignment:
Q  21 aagcaaaggcataatgagtgtatgaga--gagggttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||| |||||||||||| |||||||  |||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  5393826 aagcaagggcataatgagtttatgagagagagggttgtcccaaaagttgtaagaaaatgattgtacaaatatcatttctc 5393905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 22 - 98
Target Start/End: Complemental strand, 23378060 - 23377982
Alignment:
Q  22 agcaaaggcataatgagtgtatgagagag--ggttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||| |||||||||||||||||||||||  ||||||| |||||||||||||||||| |||| ||||||||||||||||    
T  23378060 agcaagggcataatgagtgtatgagagagagggttgtctcaaaagttgtaagaaaatggttgcacaaatatcatttctc 23377982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 39629840 - 39629906
Alignment:
Q  30 cataatgagtgtatgagagag--ggttgtcccaaaagttgtaagaaaatagttgtacaaatatcatt 94  Q
    ||||||| | |||||||||||  ||||||| |||||||||||| |||||||||||||||||||||||    
T  39629840 cataatgtgagtatgagagagaaggttgtcacaaaagttgtaaaaaaatagttgtacaaatatcatt 39629906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 98
Target Start/End: Original strand, 44813450 - 44813517
Alignment:
Q  31 ataatgagtgtatgagagagggttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||| | ||||||||||| |||||| |||||||||| |||||||  ||||||| ||||||||||||    
T  44813450 ataatgtgagtatgagagagagttgtcacaaaagttgttagaaaatgattgtacatatatcatttctc 44813517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 98
Target Start/End: Original strand, 37894268 - 37894314
Alignment:
Q  52 gttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||| |||||||||| ||||||| |||||||||||||||||||||    
T  37894268 gttgtcacaaaagttgttagaaaatggttgtacaaatatcatttctc 37894314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 98
Target Start/End: Original strand, 40159871 - 40159909
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  40159871 aaaagttgttagaaaatagttgtacaaatatcatttctc 40159909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 50559238 - 50559283
Alignment:
Q  53 ttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||| |||||||||| | |||||||||||||||||||||||||||    
T  50559238 ttgtcacaaaagttgtcaaaaaatagttgtacaaatatcatttctc 50559283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 47988518 - 47988554
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcatttc 96  Q
    ||||||||| |||||||||||||||||||||||||||    
T  47988518 aaaagttgttagaaaatagttgtacaaatatcatttc 47988554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 47997805 - 47997841
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcatttc 96  Q
    ||||||||| |||||||||||||||||||||||||||    
T  47997805 aaaagttgttagaaaatagttgtacaaatatcatttc 47997841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 48007092 - 48007128
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcatttc 96  Q
    ||||||||| |||||||||||||||||||||||||||    
T  48007092 aaaagttgttagaaaatagttgtacaaatatcatttc 48007128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 48309912 - 48309841
Alignment:
Q  29 gcataatgagtgtat--gagagagggttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||| |||||  |||||| ||||||||||||| || |||||||||  |||||||||||| |||||||    
T  48309912 gcataatgaatgtatacgagagatggttgtcccaaaaattataagaaaattattgtacaaatataatttctc 48309841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 40 - 99
Target Start/End: Original strand, 23553602 - 23553661
Alignment:
Q  40 gtatgagagagggttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctcc 99  Q
    ||||||||||| |||||| ||||||||||   ||| ||||||| ||||||||||||||||    
T  23553602 gtatgagagagagttgtcacaaaagttgtttaaaagtagttgttcaaatatcatttctcc 23553661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 52 - 111
Target Start/End: Original strand, 29573381 - 29573440
Alignment:
Q  52 gttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctccatatcaaaaggg 111  Q
    |||||| |||||||||| | ||||| ||||||||||||||||||||| || | |||||||    
T  29573381 gttgtcacaaaagttgttacaaaatggttgtacaaatatcatttctcaatttgaaaaggg 29573440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 98
Target Start/End: Original strand, 41637296 - 41637351
Alignment:
Q  43 tgagagagggttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||||  |||||| |||||||||| | ||||||||||||||||||||| |||||    
T  41637296 tgagagaaagttgtcacaaaagttgtcaaaaaatagttgtacaaatatcacttctc 41637351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 59 - 98
Target Start/End: Original strand, 48944742 - 48944781
Alignment:
Q  59 caaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||||||| ||||||| |||||||||||||||||||||    
T  48944742 caaaagttgttagaaaatggttgtacaaatatcatttctc 48944781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 59 - 98
Target Start/End: Original strand, 54233500 - 54233539
Alignment:
Q  59 caaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||||||||| ||||| |||||||||||||||||||||    
T  54233500 caaaagttgtaaaaaaatggttgtacaaatatcatttctc 54233539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 98
Target Start/End: Original strand, 7867744 - 7867782
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  7867744 aaaagttgtcacaaaatagttgtacaaatatcatttctc 7867782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 98
Target Start/End: Original strand, 11335335 - 11335373
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||| ||||||| |||||||||||||||||||||    
T  11335335 aaaagttgttagaaaatggttgtacaaatatcatttctc 11335373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 98
Target Start/End: Original strand, 41448193 - 41448247
Alignment:
Q  44 gagagagggttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||||||||||  ||||||||||   ||||| |||||||||||||||||||||    
T  41448193 gagagagggttgtttcaaaagttgtttaaaaatggttgtacaaatatcatttctc 41448247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 98
Target Start/End: Original strand, 45528975 - 45529013
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  45528975 aaaagttgtcaaaaaatagttgtacaaatatcatttctc 45529013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 98
Target Start/End: Original strand, 51032657 - 51032695
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||| ||||||| |||||||||||||||||||||    
T  51032657 aaaagttgttagaaaatggttgtacaaatatcatttctc 51032695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 98
Target Start/End: Original strand, 51137061 - 51137107
Alignment:
Q  52 gttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||| |||||||| | | |||||||||||||||||||||||||||    
T  51137061 gttgtcacaaaagttattaaaaaatagttgtacaaatatcatttctc 51137107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 98
Target Start/End: Complemental strand, 52939710 - 52939653
Alignment:
Q  40 gtatgagagagggttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||||  |||||| |||||||||||| ||||| ||||| |||||||||||||||    
T  52939710 gtatgagagaaagttgtcacaaaagttgtaa-aaaatggttgttcaaatatcatttctc 52939653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 98
Target Start/End: Complemental strand, 54134890 - 54134852
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  54134890 aaaagttgtaaaaaaatggttgtacaaatatcatttctc 54134852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 6178452 - 6178496
Alignment:
Q  53 ttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||| |||||||||| | |||||||||||||||||||||||||||    
T  6178452 ttgtcacaaaagttgtca-aaaatagttgtacaaatatcatttctc 6178496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 96
Target Start/End: Complemental strand, 25595979 - 25595942
Alignment:
Q  59 caaaagttgtaagaaaatagttgtacaaatatcatttc 96  Q
    |||||||||||  |||||||||||||||||||||||||    
T  25595979 caaaagttgtaccaaaatagttgtacaaatatcatttc 25595942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 102
Target Start/End: Complemental strand, 31425599 - 31425530
Alignment:
Q  33 aatgagtgtatgagagagggttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctccata 102  Q
    |||||| |||||||||| | ||||| |||||||||| | ||||| | ||| ||||||||||| |||||||    
T  31425599 aatgagagtatgagagatgattgtcacaaaagttgttaaaaaatggatgttcaaatatcattactccata 31425530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 98
Target Start/End: Complemental strand, 35368659 - 35368622
Alignment:
Q  61 aaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||||||  |||||||||||||||||||||||||||    
T  35368659 aaagttgtacaaaaatagttgtacaaatatcatttctc 35368622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 97
Target Start/End: Original strand, 42357094 - 42357150
Alignment:
Q  40 gtatgagagagggttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttct 97  Q
    ||||||||||  |||||| |||||||||||| ||||| ||||| ||||||||||||||    
T  42357094 gtatgagagaaagttgtcacaaaagttgtaa-aaaatggttgttcaaatatcatttct 42357150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 47683920 - 47683969
Alignment:
Q  45 agagagggttgtcccaaaagttgtaagaaaatagttgtacaaatatcatt 94  Q
    ||||| ||||||| |||||||||| | ||||| |||||||||||||||||    
T  47683920 agagaaggttgtctcaaaagttgtcacaaaatggttgtacaaatatcatt 47683969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 52963342 - 52963387
Alignment:
Q  53 ttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||| |||||||||| | ||||| |||||||||||||||||||||    
T  52963342 ttgtcacaaaagttgttaaaaaatggttgtacaaatatcatttctc 52963387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 98
Target Start/End: Original strand, 7245 - 7285
Alignment:
Q  58 ccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||||| |||||||  ||||||||||||||||||||    
T  7245 ccaaaagttgtcagaaaatgattgtacaaatatcatttctc 7285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 1295372 - 1295332
Alignment:
Q  58 ccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||| | | |||||||||||||||||||||||||||    
T  1295372 ccaaaagttatcacaaaatagttgtacaaatatcatttctc 1295332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 14839077 - 14839117
Alignment:
Q  59 caaaagttgtaagaaaatagttgtacaaatatcatttctcc 99  Q
    |||||||||||  ||||| ||||||||||||||||||||||    
T  14839077 caaaagttgtacaaaaatggttgtacaaatatcatttctcc 14839117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 98
Target Start/End: Original strand, 48179096 - 48179124
Alignment:
Q  70 agaaaatagttgtacaaatatcatttctc 98  Q
    |||||||||||||||||||||||||||||    
T  48179096 agaaaatagttgtacaaatatcatttctc 48179124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 50652428 - 50652388
Alignment:
Q  58 ccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||||| | ||||| |||||||||||||||||||||    
T  50652428 ccaaaagttgtcataaaatggttgtacaaatatcatttctc 50652388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 35848484 - 35848412
Alignment:
Q  28 ggcataatgagtgtatgagagag--ggttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||||||||||||||||||||  ||||||||||||| || ||||||||| |||||||||||||||||||||    
T  35848484 ggcataatgagtgtatgagagagagggttgtcccaaaaattataagaaaatggttgtacaaatatcatttctc 35848412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 94
Target Start/End: Complemental strand, 37947155 - 37947112
Alignment:
Q  51 ggttgtcccaaaagttgtaagaaaatagttgtacaaatatcatt 94  Q
    |||||||||||||||||||| ||||||||||| |||||||||||    
T  37947155 ggttgtcccaaaagttgtaacaaaatagttgttcaaatatcatt 37947112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 60 - 97
Target Start/End: Original strand, 15182616 - 15182653
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcatttct 97  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  15182616 aaaagttgttagaaaatagttgtacaaatatcatttct 15182653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 98
Target Start/End: Original strand, 740983 - 741027
Alignment:
Q  54 tgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||| |||||||||| |||||||||||||| ||||||||||||||    
T  740983 tgtcacaaaagttgttagaaaatagttgtataaatatcatttctc 741027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 48336390 - 48336346
Alignment:
Q  51 ggttgtcccaaaagttgtaagaaaatagttgtacaaatatcattt 95  Q
    |||||||| ||||||||||| ||||||||||| ||||||||||||    
T  48336390 ggttgtccaaaaagttgtaacaaaatagttgttcaaatatcattt 48336346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 52 - 99
Target Start/End: Complemental strand, 649814 - 649767
Alignment:
Q  52 gttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctcc 99  Q
    |||||| |||||||||||| ||||| ||||| ||||||||||||||||    
T  649814 gttgtcacaaaagttgtaaaaaaatggttgttcaaatatcatttctcc 649767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 59 - 98
Target Start/End: Original strand, 12999854 - 12999893
Alignment:
Q  59 caaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||||||| ||||||| |||||||||||||||||||||    
T  12999854 caaaagttgttagaaaatggttgtacaaatatcatttctc 12999893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 98
Target Start/End: Original strand, 21433409 - 21433472
Alignment:
Q  35 tgagtgtatgagagagggttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||| || ||||||  |||||| |||||||||| | ||||| |||||||||||||||||||||    
T  21433409 tgagtataagagagaaagttgtcacaaaagttgttacaaaatggttgtacaaatatcatttctc 21433472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 99
Target Start/End: Complemental strand, 33076157 - 33076118
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcatttctcc 99  Q
    ||||||||| ||||||| ||||||||||||||||||||||    
T  33076157 aaaagttgttagaaaatggttgtacaaatatcatttctcc 33076118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 99
Target Start/End: Original strand, 50141968 - 50142007
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcatttctcc 99  Q
    ||||||||| |||||||||||| |||||||||||||||||    
T  50141968 aaaagttgtgagaaaatagttgaacaaatatcatttctcc 50142007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 1689437 - 1689391
Alignment:
Q  52 gttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||| ||||| |||| | |||||||||||||||||||||||||||    
T  1689437 gttgtcacaaaaattgttataaaatagttgtacaaatatcatttctc 1689391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 11947841 - 11947795
Alignment:
Q  52 gttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||| |||||||||| | ||||| |||||||||||||||||||||    
T  11947841 gttgtcacaaaagttgtcataaaatggttgtacaaatatcatttctc 11947795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 98
Target Start/End: Complemental strand, 16263463 - 16263425
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||| |||||||| ||||||||||||||||||||    
T  16263463 aaaagttgttagaaaataattgtacaaatatcatttctc 16263425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 98
Target Start/End: Original strand, 18541084 - 18541122
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||| ||||||| |||||||||||||||||||||    
T  18541084 aaaagttgttagaaaatggttgtacaaatatcatttctc 18541122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 98
Target Start/End: Complemental strand, 18610811 - 18610773
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  18610811 aaaagttgtcacaaaatagttgtacaaatatcatttctc 18610773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 98
Target Start/End: Complemental strand, 45042299 - 45042261
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||| |||| |||||||||||||||||||||||||||||    
T  45042299 aaaaattgttagaaaatagttgtacaaatatcatttctc 45042261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 93
Target Start/End: Complemental strand, 48634409 - 48634367
Alignment:
Q  51 ggttgtcccaaaagttgtaagaaaatagttgtacaaatatcat 93  Q
    |||||||||||||||||| | |||||||||||||| |||||||    
T  48634409 ggttgtcccaaaagttgtcacaaaatagttgtacagatatcat 48634367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 98
Target Start/End: Original strand, 50017456 - 50017494
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  50017456 aaaagttgtaataaaattgttgtacaaatatcatttctc 50017494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 38965512 - 38965545
Alignment:
Q  31 ataatgagtgtatgagagagggttgtcccaaaag 64  Q
    |||||||||||||||||||||||| |||||||||    
T  38965512 ataatgagtgtatgagagagggttatcccaaaag 38965545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 98
Target Start/End: Complemental strand, 41425279 - 41425242
Alignment:
Q  61 aaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||||||  |||||||||||||||||||||||||||    
T  41425279 aaagttgtaccaaaatagttgtacaaatatcatttctc 41425242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 49020430 - 49020475
Alignment:
Q  53 ttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||| |||||||||| | ||||| |||||||||||||||||||||    
T  49020430 ttgtcacaaaagttgttaaaaaatggttgtacaaatatcatttctc 49020475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 22674751 - 22674707
Alignment:
Q  59 caaaagttgtaagaaaatagttgtacaaatatcatttctccatat 103  Q
    ||||| |||||  ||||||||||||||||||||||||||| ||||    
T  22674751 caaaaattgtacaaaaatagttgtacaaatatcatttctctatat 22674707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 23472147 - 23472107
Alignment:
Q  59 caaaagttgtaagaaaatagttgtacaaatatcatttctcc 99  Q
    ||||| |||||  ||||||||||||||||||||||||||||    
T  23472147 caaaatttgtataaaaatagttgtacaaatatcatttctcc 23472107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 24680961 - 24681040
Alignment:
Q  21 aagcaaaggcataatgagtgtatgagagaggg--ttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||| | ||||||||||||||||||||| |  |||||||||||||| ||||||||| ||| |||||||||||||||||    
T  24680961 aagcaaggacataatgagtgtatgagagagaggattgtcccaaaagttataagaaaatggttatacaaatatcatttctc 24681040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 59 - 98
Target Start/End: Complemental strand, 26153685 - 26153646
Alignment:
Q  59 caaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||||||| | |||||||||||||||||||||||||||    
T  26153685 caaaagttgtcataaaatagttgtacaaatatcatttctc 26153646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 59 - 98
Target Start/End: Complemental strand, 27704474 - 27704435
Alignment:
Q  59 caaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||||||||  |||||||||||||||||||||||||||    
T  27704474 caaaagttgtacaaaaatagttgtacaaatatcatttctc 27704435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 59 - 98
Target Start/End: Original strand, 28548253 - 28548292
Alignment:
Q  59 caaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||||||||  |||||||||||||||||||||||||||    
T  28548253 caaaagttgtaccaaaatagttgtacaaatatcatttctc 28548292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 59 - 98
Target Start/End: Complemental strand, 37969970 - 37969931
Alignment:
Q  59 caaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||||||||  |||||||||||||||||||||||||||    
T  37969970 caaaagttgtatcaaaatagttgtacaaatatcatttctc 37969931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 59 - 98
Target Start/End: Original strand, 40207832 - 40207871
Alignment:
Q  59 caaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||||||||  |||||||||||||||||||||||||||    
T  40207832 caaaagttgtacaaaaatagttgtacaaatatcatttctc 40207871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 95
Target Start/End: Complemental strand, 42640881 - 42640846
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcattt 95  Q
    ||||||||| ||||||||||||||||||||||||||    
T  42640881 aaaagttgttagaaaatagttgtacaaatatcattt 42640846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 98
Target Start/End: Original strand, 6822555 - 6822593
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||| ||||||| |||||||||||||||||||||    
T  6822555 aaaagttgttagaaaatggttgtacaaatatcatttctc 6822593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 98
Target Start/End: Complemental strand, 30391197 - 30391159
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||||| ||||||||| |||||||||||||||||    
T  30391197 aaaagttgtaataaaatagttatacaaatatcatttctc 30391159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 101
Target Start/End: Complemental strand, 37832485 - 37832447
Alignment:
Q  63 agttgtaagaaaatagttgtacaaatatcatttctccat 101  Q
    |||||| | ||||||||||||||||||||||||||||||    
T  37832485 agttgtcacaaaatagttgtacaaatatcatttctccat 37832447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 98
Target Start/End: Original strand, 40693561 - 40693599
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  40693561 aaaagttgtcaaaaaatagttgtacaaatatcatttctc 40693599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 98
Target Start/End: Complemental strand, 42276129 - 42276091
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||| |||| |||||||||||||||||||||||||||||    
T  42276129 aaaaattgttagaaaatagttgtacaaatatcatttctc 42276091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 42584848 - 42584802
Alignment:
Q  52 gttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||| |||||||||| ||||||| |||||||| ||||||||||||    
T  42584848 gttgtcacaaaagttgttagaaaatggttgtacatatatcatttctc 42584802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 19510380 - 19510417
Alignment:
Q  61 aaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  19510380 aaagttgtgagaaaataattgtacaaatatcatttctc 19510417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 23389627 - 23389664
Alignment:
Q  61 aaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  23389627 aaaggtgtaaaaaaatagttgtacaaatatcatttctc 23389664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 34108881 - 34108926
Alignment:
Q  53 ttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||| |||||||||| ||||||| |||||||| ||||||||||||    
T  34108881 ttgtcacaaaagttgttagaaaatggttgtacatatatcatttctc 34108926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 97
Target Start/End: Original strand, 44496828 - 44496873
Alignment:
Q  52 gttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttct 97  Q
    |||||| ||||| |||| ||||||||||| ||||||||||||||||    
T  44496828 gttgtcacaaaaattgttagaaaatagttatacaaatatcatttct 44496873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 11789723 - 11789767
Alignment:
Q  59 caaaagttgtaagaaaatagttgtacaaatatcatttctccatat 103  Q
    |||||||||||  ||||| ||||||||||||||||||||| ||||    
T  11789723 caaaagttgtactaaaatggttgtacaaatatcatttctcaatat 11789767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 97
Target Start/End: Original strand, 23910277 - 23910321
Alignment:
Q  53 ttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttct 97  Q
    ||||| |||||||||| | ||||| ||||||||||||||||||||    
T  23910277 ttgtcacaaaagttgtcaaaaaatggttgtacaaatatcatttct 23910321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 27704572 - 27704612
Alignment:
Q  52 gttgtcccaaaagttgtaagaaaatagttgtacaaatatca 92  Q
    ||||||||||||||||||| |||| |||||| |||||||||    
T  27704572 gttgtcccaaaagttgtaacaaaagagttgttcaaatatca 27704612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 97
Target Start/End: Original strand, 30818023 - 30818067
Alignment:
Q  53 ttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttct 97  Q
    ||||| |||||||||| | ||||| ||||||||||||||||||||    
T  30818023 ttgtctcaaaagttgtcataaaatggttgtacaaatatcatttct 30818067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 30941431 - 30941384
Alignment:
Q  52 gttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctcca 100  Q
    |||||| |||||||||||| ||||| ||||| |||||||||||||||||    
T  30941431 gttgtcacaaaagttgtaa-aaaatggttgttcaaatatcatttctcca 30941384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 37385265 - 37385301
Alignment:
Q  59 caaaagttgtaagaaaatagttgtacaaatatcattt 95  Q
    |||||||||| | ||||||||||||||||||||||||    
T  37385265 caaaagttgtcaaaaaatagttgtacaaatatcattt 37385301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 97
Target Start/End: Original strand, 38547313 - 38547349
Alignment:
Q  61 aaagttgtaagaaaatagttgtacaaatatcatttct 97  Q
    |||||||| | ||||||||||||||||||||||||||    
T  38547313 aaagttgtcaaaaaatagttgtacaaatatcatttct 38547349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 98
Target Start/End: Original strand, 204450 - 204516
Alignment:
Q  31 ataatgagtgtatgagagagggttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||| | |||||||||| |||||| | ||||||||| ||||||||| |||||||||||||||||||    
T  204450 ataatgtgagtatgagagaaggttgtac-aaaagttgtcagaaaatagatgtacaaatatcatttctc 204516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 19724 - 19765
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcatttctccat 101  Q
    ||||||||| | ||||||||||||||||||||||||||||||    
T  19724 aaaagttgtcacaaaatagttgtacaaatatcatttctccat 19765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 59 - 98
Target Start/End: Complemental strand, 337157 - 337118
Alignment:
Q  59 caaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||||||| ||||||| |||||||||||||||||||||    
T  337157 caaaagttgtcagaaaatggttgtacaaatatcatttctc 337118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 95
Target Start/End: Complemental strand, 324121 - 324045
Alignment:
Q  21 aagcaaaggcataatgagtgtatgagagaggg--ttgtcccaaaagttgtaagaaaatagttgtacaaatatcattt 95  Q
    |||||| |||||||||| | |||||||||| |  ||||||||||| || ||||||||| ||| ||||||||| ||||    
T  324121 aagcaagggcataatgaatatatgagagagaggattgtcccaaaaattataagaaaatggttctacaaatattattt 324045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 366339 - 366292
Alignment:
Q  52 gttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctcca 100  Q
    |||||| |||||||||| | ||||| |||||||||||||||||||||||    
T  366339 gttgtcacaaaagttgtta-aaaatggttgtacaaatatcatttctcca 366292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 98
Target Start/End: Complemental strand, 1116 - 1078
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  1116 aaaagttgtcacaaaatagttgtacaaatatcatttctc 1078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 1192 - 1146
Alignment:
Q  52 gttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    |||||| |||||||||| || ||||| ||||||||||||||||||||    
T  1192 gttgtcacaaaagttgttaggaaataattgtacaaatatcatttctc 1146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 98
Target Start/End: Complemental strand, 60507 - 60469
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  60507 aaaagttgtaataaaatggttgtacaaatatcatttctc 60469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 98
Target Start/End: Complemental strand, 155944 - 155906
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcatttctc 98  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  155944 aaaagttgtaataaaatggttgtacaaatatcatttctc 155906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 16627 - 16668
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcatttctccat 101  Q
    ||||||||| | ||||| ||||||||||||||||||||||||    
T  16627 aaaagttgttacaaaatggttgtacaaatatcatttctccat 16668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 56217 - 56176
Alignment:
Q  60 aaaagttgtaagaaaatagttgtacaaatatcatttctccat 101  Q
    ||||||||| | ||||| ||||||||||||||||||||||||    
T  56217 aaaagttgttacaaaatggttgtacaaatatcatttctccat 56176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 35580 - 35524
Alignment:
Q  40 gtatgagagagggttgtcccaaaagttgtaagaaaatagttgtacaaatatcatttct 97  Q
    ||||||||||| ||| || |||||||||||| ||||| ||||| ||||||||||||||    
T  35580 gtatgagagagagttatcacaaaagttgtaa-aaaatggttgttcaaatatcatttct 35524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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