View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11089_low_4 (Length: 664)
Name: NF11089_low_4
Description: NF11089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11089_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 17 - 454
Target Start/End: Complemental strand, 44958746 - 44958306
Alignment:
| Q |
17 |
atattctcatccttcatcacttctaagcatatttacctgtctgcttctttttcaactaatactttgaacttattgaagacatgaaacacttcatctttag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
44958746 |
atattctcatccttcatcacttctaagcatatttacctgtctgcttctttttcaactaatactttgaacttattgaagacatgaaacacttcatctctag |
44958647 |
T |
|
| Q |
117 |
tcttgattaggtaaacctacgtaattgtactgtattcacccataaatgagacaatgtacctattccctcacaatgaaaatgtatcaaatggtccactaac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44958646 |
tcttgattaggtaaacctacgtaattgtactgtattcacccataaatgagacaatgtacctattccctcacaatgaaaatgtatcaaatggtccactaac |
44958547 |
T |
|
| Q |
217 |
atcttattaaaccacatcaagctttgccctcactggaatacgagaaacaaatgaggtccttgctcgtcaagcaacttaattcgggaaaaccatgcaccat |
316 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44958546 |
atcttattaaaccacatcaagctttgccctcattggaatatgagaaacaaatgagttccttgctcgtcaagcaacttaattcgggaaaaccatgcaccat |
44958447 |
T |
|
| Q |
317 |
t---gaccttgacttcaaaatactaagaaccttaaagttaggtggctatacccaaggtaccacaaccatgttacatcatcaattacctcagttgcaaaat |
413 |
Q |
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| T |
44958446 |
tgacgaccttgacttcaaaatgctaagaaccttaaagttaggtgtctatacccaaggtaccacaaccatgttacatcatcaattacctcagttgcaaaat |
44958347 |
T |
|
| Q |
414 |
agtgaaatttagttgcattgatttggacttgaaatattcta |
454 |
Q |
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| T |
44958346 |
agtgaaatttagttgcattgatttggacttgaaatattcta |
44958306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 447 - 664
Target Start/End: Complemental strand, 44958112 - 44957899
Alignment:
| Q |
447 |
atattctattatgagatataggagctcttaattagaattctcttatattaattcaacttcaaaaacttatatttggttgtgttcaatgtgcatagtaaaa |
546 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44958112 |
atattctattatgagatataggagctctta----gaattctcttatattaattcaacttcaaaaacttatatttggttgtgttcaatgtgcatagtaaaa |
44958017 |
T |
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| Q |
547 |
cctttttctagtaattagcccatgcttattaaattactcttgatcctaggaacatagatcacccatgtaatgatttccttgtgtccatgcttgcctttga |
646 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44958016 |
cctttttgtagtaattagcccatgcttattaaattactcttgatcctaggaacatagatcacccatgtaatgatttccttgtgtccatgcttgcctttga |
44957917 |
T |
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| Q |
647 |
tgagcacatttcctttcc |
664 |
Q |
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|||||||||||||||||| |
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| T |
44957916 |
tgagcacatttcctttcc |
44957899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 505 - 562
Target Start/End: Original strand, 32561428 - 32561485
Alignment:
| Q |
505 |
tcaaaaacttatatttggttgtgttcaatgtgcatagtaaaacctttttctagtaatt |
562 |
Q |
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|||||||||| ||||| |||||||||| |||||||||||||| ||||||||||||| |
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| T |
32561428 |
tcaaaaactttaatttgattgtgttcaagatgcatagtaaaaccattttctagtaatt |
32561485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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