View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11089_low_41 (Length: 283)
Name: NF11089_low_41
Description: NF11089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11089_low_41 |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 101 - 266
Target Start/End: Complemental strand, 32045832 - 32045667
Alignment:
| Q |
101 |
aattaactcatcctcctaaatataaataaaaaccttgtaaggagagtgatcacttttttataaactcatttcattgtgccttatctttgttcaatgtgaa |
200 |
Q |
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| T |
32045832 |
aattaactcatcctcctaaatataaataaaaaccttgtaaggagagtgatcacttttttataaactcatttcattgtgccttatctttgttcaatgtgaa |
32045733 |
T |
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| Q |
201 |
acatagatttttctcaaaacaccacctcatgtccagctctattgtgtttggtgtgttgatataaat |
266 |
Q |
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| T |
32045732 |
acatagatttttctcaaaacaccacctcatgtccagctctattgtgtttggtgtcttgatataaat |
32045667 |
T |
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Target: chr7; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 32046103 - 32046020
Alignment:
| Q |
22 |
tatgagtagtttagttaaaacaatatgaaaatcatctaagaaaatgcacctatattttttccttatgtcttaacattggaatta |
105 |
Q |
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| T |
32046103 |
tatgagtagtttagttaaaacaatacgaaaattatctaagaaaatgtacctatattttttccttatgtcttaacattggaatta |
32046020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 39330094 - 39330035
Alignment:
| Q |
23 |
atgagtagtttagttaa-aacaatatgaaaatcatctaagaaaatgcacctatatttttt |
81 |
Q |
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| T |
39330094 |
atgagtagtttatttatgaaccatatgaaaaacatctaagaaaatgcacctatgtttttt |
39330035 |
T |
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