View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11089_low_42 (Length: 279)
Name: NF11089_low_42
Description: NF11089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11089_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 10243378 - 10243111
Alignment:
| Q |
1 |
accggtggttggtaaaccggaggcttctcataattggcaagaccctgaggaatggcaaagagagcaaaaagaagcagcactaggaagtttgaggaagcca |
100 |
Q |
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| T |
10243378 |
accggtggttggtaaaccggaggcttctcataattggcaagaccctgaggaatggcaaatagagcaaaaagaagcagcactaggaagtttgaggaagcca |
10243279 |
T |
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| Q |
101 |
tgttagtgacttatgagtttggtgcagaaaacacaagagtgacttcctccttttatactagtcgtgatcttggtgaatccactcacaatcttgataaggt |
200 |
Q |
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| T |
10243278 |
tgttagtgacttatgagtttggtgcagaaaacacaagagtgacttcctccttttatactagtcgtgatctttgtgaatccactcacaatcttgataaggt |
10243179 |
T |
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| Q |
201 |
aatgacttggcactttcttgtaacaaaattcaagggttgttggtgattgatctacattatttacctatg |
269 |
Q |
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| T |
10243178 |
gatgacttggccctttcttgtaacaaaattcaagggttgttggtgatt-ttctacattatttacctatg |
10243111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 10217053 - 10216771
Alignment:
| Q |
1 |
accggtggttggtaaaccggaggcttctcataattggcaagaccctgaggaatggcaaagagagcaaaaagaagcagcactaggaagtttgaggaagcca |
100 |
Q |
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| T |
10217053 |
accggtggttggtaaaccggaggcttgtcataattggcaagaccccgagggatagcaaagagagcaaaaagaagcagcactaaaaagtttgaggaagcca |
10216954 |
T |
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| Q |
101 |
tgttagtgacttatgagtttggtgcagaaaacacaagagtgacttcctccttttatactagtcgtgatcttggtgaatccactca--------------- |
185 |
Q |
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| T |
10216953 |
tgttagtgacttatgagtttggtgcataaaacacaagagtgacttgctgcttttatactagtcgtgatcttagtgaaaccactcagtcacagctgcctga |
10216854 |
T |
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| Q |
186 |
--caatcttgataaggtaatgacttggcactttcttgtaacaaaattcaagggttgttggtgattgatctacattatttaccta |
267 |
Q |
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| T |
10216853 |
ctcaatcttgataaggtaatgacttggcactctcttataacaaaagtcaatggttgttgctgatt-ttctacattatttaccta |
10216771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 10253851 - 10253684
Alignment:
| Q |
19 |
ggaggcttctcataattggcaagaccctgaggaatggcaaagagagcaaaaagaagcagcactaggaagtttgaggaagccatgttagtgacttatgagt |
118 |
Q |
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| T |
10253851 |
ggaggtttctcgtagttggcaaaccccttagggatgacaaagagagcaaagaggagcatcattagaaagtttgaggaagccatgttagtgacttat-aat |
10253753 |
T |
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| Q |
119 |
ttggtgcagaaaacacaagagtgacttcctccttttatactagtcgtgatcttggtgaatccactcaca |
187 |
Q |
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| T |
10253752 |
ttggtgcataaaatacaagtgtgaccagctccttttatactagtcgtgatcttagtgaatccactcaca |
10253684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 93 - 182
Target Start/End: Complemental strand, 10278342 - 10278254
Alignment:
| Q |
93 |
ggaagccatgttagtgacttatgagtttggtgcagaaaacacaagagtgacttcctccttttatactagtcgtgatcttggtgaatccac |
182 |
Q |
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| T |
10278342 |
ggaagccatgttagtgacttatga-tttggtgcataaaacacaagagtgactagctccttttatactagtcgtgatcttagtgaatccac |
10278254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 184
Target Start/End: Complemental strand, 10333592 - 10333440
Alignment:
| Q |
37 |
gcaagaccctgaggaatggcaaagagagcaaaaagaagcagcactaggaagtttgaggaagccatgttagt--gacttatgagtttggtgcagaaaacac |
134 |
Q |
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| T |
10333592 |
gcaagaccctgagggatgacaatgagaacaataagaagcaacactaggaagcgaaaggaagccatattagtttgatttttgagtttggtacataaaacac |
10333493 |
T |
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| Q |
135 |
aagagtga---cttcctccttttatactagtcgtgatcttggtgaatccactc |
184 |
Q |
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| T |
10333492 |
aagagtgatgactagctgcttttatactagtcttggtctttgtgagtccactc |
10333440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 184
Target Start/End: Complemental strand, 10346466 - 10346318
Alignment:
| Q |
37 |
gcaagaccctgaggaatggcaaagagagcaaaaagaagcagcactaggaagtttgaggaagccatgttagt--gacttatgagtttggtgcagaaaacac |
134 |
Q |
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|||| ||||||||| ||| ||| |||| ||| |||||||| |||||||||| |||||||||| ||||| || || |||||||||| || ||||||| |
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| T |
10346466 |
gcaaaaccctgagggatgacaatgagaacaataagaagcaacactaggaagcgaaaggaagccatcttagtttgatttttgagtttggtacataaaacac |
10346367 |
T |
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| Q |
135 |
aagagtgacttcctccttttatactagtcgtgatcttggtgaatccactc |
184 |
Q |
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| T |
10346366 |
aagagtgactagctgc-tttatactagtcttggtctttgtgagtccactc |
10346318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 10351193 - 10351141
Alignment:
| Q |
92 |
aggaagccatgttagtgacttatgagtttggtgcagaaaacacaagagtgact |
144 |
Q |
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| T |
10351193 |
aggaagccatcttagtgatttttgagtttggtgcttaaaacacaagagtgact |
10351141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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