View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11089_low_45 (Length: 272)
Name: NF11089_low_45
Description: NF11089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11089_low_45 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 13 - 258
Target Start/End: Original strand, 20528811 - 20529056
Alignment:
| Q |
13 |
agacgggacaacaactggtgtagctgaggcaacagcgctaacaattgctggttgtatagcagatagaacagcagctggtgtaacagaggcagcaatgcta |
112 |
Q |
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| T |
20528811 |
agacgggacaacaactggtgtagcagaggcagcagcgctaacaattgctggttgtatagcagacagaacagcagctggtgtaatagaggcatcaacgcta |
20528910 |
T |
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| Q |
113 |
acagatgctggttgcatgacaacagtagccgcattcaaggtttcagcaccagagccattcacaagttgccaatcttcaaccaaagaccgagctctttcaa |
212 |
Q |
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| T |
20528911 |
acagatgctggttgcatgacaacagtagccgcattcaaggtttcagcaccagagctattcacaagttgccaatcttcaaccaaagaccgagctctttcaa |
20529010 |
T |
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| Q |
213 |
ccactattgtacaagtttctttaacatcttcccacacctttatatt |
258 |
Q |
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| T |
20529011 |
ccactgttgcacaagtttctttaacatcttcccacacctttatatt |
20529056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 110 - 258
Target Start/End: Original strand, 12371361 - 12371509
Alignment:
| Q |
110 |
ctaacagatgctggttgcatgacaacagtagccgcattcaaggtttcagcaccagagccattcacaagttgccaatcttcaaccaaagaccgagctcttt |
209 |
Q |
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| T |
12371361 |
ctaacagctgctggttgcatgacagcattagccacattcatgttttcagcaccggagctattcacaagttgccaatcttcaaccaaagaccgagctcttt |
12371460 |
T |
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| Q |
210 |
caaccactattgtacaagtttctttaacatcttcccacacctttatatt |
258 |
Q |
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| T |
12371461 |
caaccactgttgcacaagtttccgtaacatcttcccacacctttatatt |
12371509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 85 - 258
Target Start/End: Complemental strand, 26682668 - 26682495
Alignment:
| Q |
85 |
agctggtgtaacagaggcagcaatgctaacagatgctggttgcatgacaacagtagccgcattcaaggtttcagcaccagagccattcacaagttgccaa |
184 |
Q |
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||||||||||||||| |||| |||||| |||||||||||||||| ||||||||||||||||| ||||||||| |||| |||| ||||||||||| |
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| T |
26682668 |
agctggtgtaacagatatagcagcactaacaactgctggttgcatgacagcagtagccgcattcaagttttcagcactggagctattcgcaagttgccaa |
26682569 |
T |
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| Q |
185 |
tcttcaaccaaagaccgagctctttcaaccactattgtacaagtttctttaacatcttcccacacctttatatt |
258 |
Q |
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| T |
26682568 |
tcttcaaccaaagaccagactctttcaaccactgttgcgcaagtttccataacatcttcctacacctttatatt |
26682495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 254
Target Start/End: Original strand, 2974151 - 2974231
Alignment:
| Q |
174 |
caagttgccaatcttcaaccaaagaccgagctctttcaaccactattgtacaagtttctttaacatcttcccacaccttta |
254 |
Q |
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|||| ||||| || |||| ||| ||||| |||||||| |||||||||| |||||||||| | || |||||||||||||||| |
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| T |
2974151 |
caagatgccagtcgtcaatcaaggaccgcgctctttccaccactattgcacaagtttctgtgacgtcttcccacaccttta |
2974231 |
T |
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