View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11089_low_57 (Length: 243)
Name: NF11089_low_57
Description: NF11089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11089_low_57 |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 40243178 - 40242950
Alignment:
| Q |
1 |
actggttatttaattgcaacaactacaaaa-gttggaatttctcaagaatatatcctcgtaataatgccacattaacctttttctt-----aatcttttt |
94 |
Q |
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||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
40243178 |
actggttatttaatttcaacaactacaaaaagttggaatttctcaagaatatatcctcgtaataatgccacattaccctttttcttttcttaatcttttt |
40243079 |
T |
|
| Q |
95 |
ccttattcttccaagagatttaaactaaagttggattttctcttaagagaacatctacaaaaagttctatggatatctaatgtccatatacacgtgacat |
194 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40243078 |
ccttattcttccaagagatttaaactaaagttggaatttctcttaagagaacatctacaaaaagttctatggatatctaatttccatatacacgtgacat |
40242979 |
T |
|
| Q |
195 |
atgattaatcacattcaaaactatgctta |
223 |
Q |
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||||||||||| ||||||||||||||||| |
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| T |
40242978 |
atgattaatcatattcaaaactatgctta |
40242950 |
T |
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