View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11089_low_6 (Length: 552)
Name: NF11089_low_6
Description: NF11089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11089_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 1 - 535
Target Start/End: Original strand, 10294322 - 10294855
Alignment:
| Q |
1 |
gctatgctttacagactctattctgaacatggcaccaatattggatgtggcgcatgaagaggagcatggccaaatgtttgcttactgtggtgtggcacct |
100 |
Q |
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| T |
10294322 |
gctatgctttacagactctattctgaacatggcaccaatattggatgtggcgcatgaagaggagcatggccaaatgtttgcttgctgtggtgtggcacct |
10294421 |
T |
|
| Q |
101 |
gaggggtcattaaggattattcaaagtggtattggtgtggaaaagccatgcagggttggttatatatatgaagaggtagtcagtacttgggctgtcctga |
200 |
Q |
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| T |
10294422 |
gaggggtcattaaggattattcaaagtggtattagtgtggaaaagcaatgcagggttggttatatatatgaagaggtagtcagtacttgggctgtcctga |
10294521 |
T |
|
| Q |
201 |
tgaaagttactgattcttatcattcttttactgttctatcatttgtttcggagaccagagtattttcggttagtttaagttttaaagatgtgactgcttc |
300 |
Q |
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| T |
10294522 |
tgaaagttactgattcttatcattcttttattgttctatcatttgtttcggagaccagagtatttccggttagtttaagttttaaagatgtgactgcttc |
10294621 |
T |
|
| Q |
301 |
ggttggtttccaacctaatgtctgtactttggcatgtggccttgtaatggatagtttgcttgttcaaatctaccaaaattatgttaaactttgtttgcct |
400 |
Q |
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| T |
10294622 |
ggttggtttccaacctaatgtctgtactttggcatgtggccttgtaatggatagtttgcttgttcagatcta-caaaattctgttaaactttgtttgcct |
10294720 |
T |
|
| Q |
401 |
actaattctgctcatcatgaaggcacccctttgtcctctcccaattgcacattttggcatccacgcaatatgaatatcagtttgggggcagttgggcata |
500 |
Q |
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| T |
10294721 |
actaattctgctcatcatgaaggcacccctttgtcctctcccaattgcacattttggcatccacgcaatatgaatatcagtttgggggcagttgggcata |
10294820 |
T |
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| Q |
501 |
atttcatagttgtgtcaaccactaacccgtgctct |
535 |
Q |
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| T |
10294821 |
atttcatagttgtgtcaaccactaacccgtgctct |
10294855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 128; Significance: 6e-66; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 53 - 520
Target Start/End: Complemental strand, 43798904 - 43798437
Alignment:
| Q |
53 |
catgaagaggagcatggccaaatgtttgcttactgtggtgtggcacctgaggggtcattaaggattattcaaagtggtattggtgtggaaaagccatgca |
152 |
Q |
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| T |
43798904 |
catgatgagaagcatgaccaaatgtttgcttgctgtggtgtgacacctgaggggtcattaagggttattcaaagtggtatcaatgtagaaaagctactta |
43798805 |
T |
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| Q |
153 |
gggttggttatatatatgaagaggtagtcagtacttgggctgtcctgatgaaagttactgattcttatcattcttttactgttctatcatttgtttcgga |
252 |
Q |
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| || || ||||||| ||||| |||||||| | || | |||||| || | ||| |||||||||||| |||||||||||| || ||| |
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| T |
43798804 |
gaaccccttctacttatgaaggggtagctggtacttggaccgttcgaatgaaaatttcagatcaatatcattcttttctagttctatcatttcttgggga |
43798705 |
T |
|
| Q |
253 |
gaccagagtattttcggttagtttaagttttaaagatgtgactgcttcggttggtttccaacctaatgtctgtactttggcatgtggccttgtaatggat |
352 |
Q |
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||| ||| |||| || ||| | |||||||||| || ||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||| | ||| |
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| T |
43798704 |
gactagaatattgtcagttggcttaagttttactgacgtgactgattctgttggtttccaacctaatgtatgtactttggcatgtggccttgtgagtgat |
43798605 |
T |
|
| Q |
353 |
agtttgcttgttcaaatctaccaaaattatgttaaactttgtttgcctactaattctgctcatcatgaaggcacccctttgtcctctcccaattgcacat |
452 |
Q |
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||||||||||||| ||||| ||| | |||||| ||||||||||||||||| || |||| |||||||| ||||||||||||||| | |||||||| |
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| T |
43798604 |
ggtttgcttgttcagatctatcaatctgctgttaagctttgtttgcctactaaggatggtcattctgaaggcatccctttgtcctctcctatttgcacat |
43798505 |
T |
|
| Q |
453 |
tttggcatccacgcaatatgaatatcagtttgggggcagttgggcataatttcatagttgtgtcaacc |
520 |
Q |
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|||| | ||| |||| ||||||| ||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
43798504 |
cttggtacccagacaatctgaatattagtctgggggcagttgggcataatttcatcgttgtgtcaacc |
43798437 |
T |
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