View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11089_low_60 (Length: 240)
Name: NF11089_low_60
Description: NF11089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11089_low_60 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 54793229 - 54793005
Alignment:
| Q |
1 |
cctgcagttcatcattgctctggcgctccttgacaatgagggtttgattcatagactccatatcctccaagctttctattttgtctgccaattcagtact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54793229 |
cctgcagttcatcattgctctggcgctccttgacaatgagggtttgattcatagactccatatcctccaagctttctattttgtctgccaattcagtact |
54793130 |
T |
|
| Q |
101 |
catttcttccannnnnnncttaatagcttcatcatcttgatctccaagatgtttcataacttgcaatttcccttttagttcctcaatctccatttctaat |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54793129 |
catttcttccatttttttcttaatagcttcatcatcttgatctccaagatgtttcataacttgcaatttcccttttagttcctcaatctccatttctaat |
54793030 |
T |
|
| Q |
201 |
ttttgcttggcatctagttgctttt |
225 |
Q |
| |
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||||||||||||||||||||||||| |
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|
| T |
54793029 |
ttttgcttggcatctagttgctttt |
54793005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 52285897 - 52285673
Alignment:
| Q |
1 |
cctgcagttcatcattgctctggcgctccttgacaatgagggtttgattcatagactccatatcctccaagctttctattttgtctgccaattcagtact |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
52285897 |
cctgtagttcatcattgctctggcgctccttgtcaatgagggtttgattcatagactccatatcctccaaactttctattttgtctgccaattcagtact |
52285798 |
T |
|
| Q |
101 |
catttcttccannnnnnncttaatagcttcatcatcttgatctccaagatgtttcataacttgcaatttcccttttagttcctcaatctccatttctaat |
200 |
Q |
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||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52285797 |
catttcttccatttttttcttaacagcttcatcatcttgatctccaagatgtttcataacttgcaatttcccttttagttcctcaatctccatttctaat |
52285698 |
T |
|
| Q |
201 |
ttttgcttggcatctagttgctttt |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
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| T |
52285697 |
ttttgcttggcatctagttgctttt |
52285673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 801089 - 800865
Alignment:
| Q |
1 |
cctgcagttcatcattgctctggcgctccttgacaatgagggtttgattcatagactccatatcctccaagctttctattttgtctgccaattcagtact |
100 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| || | | | |
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| T |
801089 |
cctgtagttcatcattgctttggcgctccttgacaatgagggttgaattcatagactccatatcctccaagctttctattttgtcttccaactccgaatt |
800990 |
T |
|
| Q |
101 |
catttcttccannnnnnncttaatagcttcatcatcttgatctccaagatgtttcataacttgcaatttcccttttagttcctcaatctccatttctaat |
200 |
Q |
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||| ||||||| ||| |||||| ||||||||||||||||||||||||||||||||||| ||||||| | ||||| ||||| |||||||| ||| |
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| T |
800989 |
catctcttccatttttttcttgatagctgtatcatcttgatctccaagatgtttcataacttgcagtttccctctgagttcttcaatttccatttccaat |
800890 |
T |
|
| Q |
201 |
ttttgcttggcatctagttgctttt |
225 |
Q |
| |
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||||| ||||||||||||||||||| |
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| T |
800889 |
ttttgtttggcatctagttgctttt |
800865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 126 - 225
Target Start/End: Original strand, 54776055 - 54776158
Alignment:
| Q |
126 |
gcttcatcatcttgatctccaagatgtttcataacttgcaatttcccttttagttcctcaatctcca----tttctaatttttgcttggcatctagttgc |
221 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
54776055 |
gcttcatcatcttgatcttcaagatgtttcataacttgcaatttcccttttagttcctcaatctccatttctttctaatttttgtttggcatctagttgc |
54776154 |
T |
|
| Q |
222 |
tttt |
225 |
Q |
| |
|
|||| |
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|
| T |
54776155 |
tttt |
54776158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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