View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11089_low_62 (Length: 229)

Name: NF11089_low_62
Description: NF11089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11089_low_62
NF11089_low_62
[»] chr8 (12 HSPs)
chr8 (7-229)||(13810169-13810391)
chr8 (35-229)||(3322711-3322905)
chr8 (36-227)||(3259658-3259849)
chr8 (140-225)||(3405790-3405875)
chr8 (42-110)||(3259568-3259636)
chr8 (144-222)||(3396843-3396921)
chr8 (157-229)||(3283940-3284012)
chr8 (7-109)||(3322563-3322665)
chr8 (129-225)||(13790016-13790112)
chr8 (173-215)||(3377005-3377047)
chr8 (159-225)||(31177727-31177793)
chr8 (46-91)||(3266387-3266432)
[»] chr3 (1 HSPs)
chr3 (35-217)||(32409709-32409891)
[»] chr5 (1 HSPs)
chr5 (173-226)||(12598035-12598088)
[»] chr2 (1 HSPs)
chr2 (143-225)||(14765774-14765856)


Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 13810391 - 13810169
Alignment:
Q  7 acttccacgttaggtgatggttgcatgctcactttaggtgacggctgcacgttcaattccgctgatggctccatttccatgttagttgatggttcaactt 106  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  13810391 actttcacgttaggtgatggttgcatgctcactttaggtgacggctgcacgttcaattccgctgatggctccatttccatgttagttgatggctcaactt 13810292  T
Q  107 ccatgataatagattgttcgaattctgtagtaattgactgaccataaagtagatagacagctgtctccttaacaatcaatccacacccaaaaagtacaaa 206  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13810291 ccatgaaaatagattgttcgaattccgtagtaattgactgaccataaagtagatagacagctgtctccttaacaatcaatccacacccaaaaagtacaaa 13810192  T
Q  207 aatctccactttgtcaccaggtc 229  Q
    |||||||||||||||||| ||||    
T  13810191 aatctccactttgtcacctggtc 13810169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 35 - 229
Target Start/End: Original strand, 3322711 - 3322905
Alignment:
Q  35 tcactttaggtgacggctgcacgttcaattccgctgatggctccatttccatgttagttgatggttcaacttccatgataatagattgttcgaattctgt 134  Q
    |||||| |||||||||| ||| | ||| ||||||  ||||||||| || ||||||||||||||| ||||||||||| ||||  ||||| || |||||  |    
T  3322711 tcacttcaggtgacggcggcatgctcacttccgcccatggctccaatttcatgttagttgatggctcaacttccataataaatgattgctcaaattcctt 3322810  T
Q  135 agtaattgactgaccataaagtagatagacagctgtctccttaacaatcaatccacacccaaaaagtacaaaaatctccactttgtcaccaggtc 229  Q
    |||| ||||||| ||||||| |||||| || | |||||||||||||||||||||   ||||||||  |||||||||||||| |||||||||||||    
T  3322811 agtagttgactggccataaattagataaactgatgtctccttaacaatcaatccgtgcccaaaaacaacaaaaatctccacattgtcaccaggtc 3322905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 36 - 227
Target Start/End: Original strand, 3259658 - 3259849
Alignment:
Q  36 cactttaggtgacggctgcacgttcaattccgctgatggctccatttccatgttagttgatggttcaacttccatgataatagattgttcgaattctgta 135  Q
    ||||| ||||||| ||||| |||| | |||| | ||||||| |||||||||||||||||| |  |||||||||||  |||| || ||||  | |||  |     
T  3259658 cacttcaggtgacagctgctcgtttacttcctccgatggcttcatttccatgttagttgacgtctcaacttccatagtaattgaatgtttaatttccatt 3259757  T
Q  136 gtaattgactgaccataaagtagatagacagctgtctccttaacaatcaatccacacccaaaaagtacaaaaatctccactttgtcaccagg 227  Q
    |||||||| || ||||| | |||||| |||||||||| ||||||||||||||||   ||||||  |||||||||||| || | |||||||||    
T  3259758 gtaattgagtggccatatattagataaacagctgtctgcttaacaatcaatccatggccaaaagctacaaaaatctctacatcgtcaccagg 3259849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 140 - 225
Target Start/End: Original strand, 3405790 - 3405875
Alignment:
Q  140 ttgactgaccataaagtagatagacagctgtctccttaacaatcaatccacacccaaaaagtacaaaaatctccactttgtcacca 225  Q
    |||||||| |||| | |||||||||||| ||||||||| || ||||||||  |||||||  ||||||||||||||| |||||||||    
T  3405790 ttgactgatcatatattagatagacagcggtctccttagcagtcaatccatgcccaaaagctacaaaaatctccacattgtcacca 3405875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 110
Target Start/End: Original strand, 3259568 - 3259636
Alignment:
Q  42 aggtgacggctgcacgttcaattccgctgatggctccatttccatgttagttgatggttcaacttccat 110  Q
    |||| ||| ||| ||||||| ||| ||| |||||||||||||||||||||||||||| |||||||||||    
T  3259568 aggtaacgactgtacgttcacttcggctaatggctccatttccatgttagttgatggctcaacttccat 3259636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 3396843 - 3396921
Alignment:
Q  144 ctgaccataaagtagatagacagctgtctccttaacaatcaatccacacccaaaaagtacaaaaatctccactttgtca 222  Q
    ||||||||| | |||||||||||| |||||||||||| ||||||||  ||||| |  ||||||||||||||| ||||||    
T  3396843 ctgaccatatattagatagacagccgtctccttaacagtcaatccatgcccaatagctacaaaaatctccacattgtca 3396921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 3283940 - 3284012
Alignment:
Q  157 agatagacagctgtctccttaacaatcaatccacacccaaaaagtacaaaaatctccactttgtcaccaggtc 229  Q
    |||||| ||||||||||||||||||||||  ||  |||||||  |||||| |||||||| |||||||||||||    
T  3283940 agataggcagctgtctccttaacaatcaactcatgcccaaaagctacaaatatctccacattgtcaccaggtc 3284012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 109
Target Start/End: Original strand, 3322563 - 3322665
Alignment:
Q  7 acttccacgttaggtgatggttgcatgctcactttaggtgacggctgcacgttcaattccgctgatggctccatttccatgttagttgatggttcaactt 106  Q
    |||| ||| |||| ||| |||||||||   |||| ||||||| ||||| | |||| ||| ||  |||||||||||||||||||||||||||  |||||||    
T  3322563 actttcacattagatgagggttgcatgtctacttcaggtgacagctgcgcattcacttcggccaatggctccatttccatgttagttgatgaatcaactt 3322662  T
Q  107 cca 109  Q
    |||    
T  3322663 cca 3322665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 225
Target Start/End: Complemental strand, 13790112 - 13790016
Alignment:
Q  129 ttctgtagtaattgactgaccataaagtagatagacagctgtctccttaacaatcaatccacacccaaaaagtacaaaaatctccactttgtcacca 225  Q
    |||| |||||||||||||  |||| |  |||||||||| ||||| |||||||||||| ||   |||||||| |||||  |||||||| |||||||||    
T  13790112 ttctatagtaattgactggtcatatataagatagacagttgtcttcttaacaatcaacccgtccccaaaaactacaattatctccaccttgtcacca 13790016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 215
Target Start/End: Complemental strand, 3377047 - 3377005
Alignment:
Q  173 ccttaacaatcaatccacacccaaaaagtacaaaaatctccac 215  Q
    |||||||||||||||||| |||||||  |||||||||||||||    
T  3377047 ccttaacaatcaatccacgcccaaaagctacaaaaatctccac 3377005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 225
Target Start/End: Complemental strand, 31177793 - 31177727
Alignment:
Q  159 atagacagctgtctccttaacaatcaatccacacccaaaaagtacaaaaatctccactttgtcacca 225  Q
    |||||||||||||||||||||| | ||||||  ||||| |  |||||||| |||||| |||||||||    
T  31177793 atagacagctgtctccttaacagttaatccatgcccaatagctacaaaaacctccacattgtcacca 31177727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 91
Target Start/End: Original strand, 3266387 - 3266432
Alignment:
Q  46 gacggctgcacgttcaattccgctgatggctccatttccatgttag 91  Q
    ||||||||||| |||| |||| | ||||||||||||||||||||||    
T  3266387 gacggctgcacattcacttcctccgatggctccatttccatgttag 3266432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 35 - 217
Target Start/End: Original strand, 32409709 - 32409891
Alignment:
Q  35 tcactttaggtgacggctgcacgttcaattccgctgatggctccatttccatgttagttgatggttcaacttccatgataatagattgttcgaattctgt 134  Q
    |||| ||||||||||  |||| ||||| ||| ||| |||| |||| ||||||| ||||||||| ||||||||| ||  |||| || ||||| | |||  |    
T  32409709 tcacgttaggtgacgattgcatgttcacttcggctaatggttccaattccatgctagttgatgattcaacttcaatagtaattgactgttcaatttccat 32409808  T
Q  135 agtaattgactgaccataaagtagatagacagctgtctccttaacaatcaatccacacccaaaaagtacaaaaatctccactt 217  Q
     ||||||||||| ||||| |  ||||| ||||| |||||||||||||||||||||  | |||||  |||||| ||||||||||    
T  32409809 tgtaattgactggccatataccagataaacagcggtctccttaacaatcaatccatgctcaaaagctacaaagatctccactt 32409891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 12598035 - 12598088
Alignment:
Q  173 ccttaacaatcaatccacacccaaaaagtacaaaaatctccactttgtcaccag 226  Q
    |||||||||||||||||| |||||||  |||||||||||||||  |||||||||    
T  12598035 ccttaacaatcaatccacgcccaaaagctacaaaaatctccacgctgtcaccag 12598088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 225
Target Start/End: Original strand, 14765774 - 14765856
Alignment:
Q  143 actgaccataaagtagatagacagctgtctccttaacaatcaatccacacccaaaaagtacaaaaatctccactttgtcacca 225  Q
    |||||||||| | |||||||||||| ||||||||||  ||||||||   |||||||   ||||||||||| || |||||||||    
T  14765774 actgaccatatattagatagacagccgtctccttaattatcaatccgtgcccaaaagcaacaaaaatctcaacattgtcacca 14765856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University