View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11089_low_8 (Length: 537)
Name: NF11089_low_8
Description: NF11089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11089_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 123; Significance: 6e-63; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 229 - 371
Target Start/End: Complemental strand, 762481 - 762339
Alignment:
| Q |
229 |
gtattaagaggccacatttggtgtagtatggtttcaacaaaagtttataaatggtagcaatctccgattcacaggtcgattttaaaagtttgggttatga |
328 |
Q |
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| T |
762481 |
gtattaagaggccacatttggtgtagtatggtttcaacaaaagtttataaatggtagtaatctccggtttacaagtcgattttaaaagtttgggttatga |
762382 |
T |
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| Q |
329 |
aaaaatgtctacacgtcaaaagttgtgaagtttcaattattaa |
371 |
Q |
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| T |
762381 |
aaaaatgtctacacgtcaaaagttgtgaagtttcaatgattaa |
762339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 414 - 520
Target Start/End: Complemental strand, 762342 - 762239
Alignment:
| Q |
414 |
ttaaaaattactttgaagattcctacacatcattttcattgatacttggaattaacaacaaatggatacaaacaaaatttataaataactcatcatacat |
513 |
Q |
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| T |
762342 |
ttaaaaattactttgaagattcctacacatcattttcattgatactaggaatta---acaaatggatacaaacaaaatttataaataactcatcatacat |
762246 |
T |
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| Q |
514 |
ggatgtt |
520 |
Q |
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| T |
762245 |
ggatgtt |
762239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 762692 - 762552
Alignment:
| Q |
16 |
tgaaacaaagcctaaccaatgcaaaatcattccttagatagagccnnnnnnnnnccgaagcttnnnnnnngatgagtcacaccttcagctgaaccgcaat |
115 |
Q |
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| T |
762692 |
tgaaacaaagcctaaccaatgcaaaatcattccccaaatagagccaaaaaaaaac-gaagcttaaaaaaagatgagtcacaccttcagctgaaccgcaat |
762594 |
T |
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| Q |
116 |
cacccgtgcaaagctggtcctaattataaagaacaccacacc |
157 |
Q |
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| T |
762593 |
caaccgtgtaaagctggtcctgattatgaagaacaccacacc |
762552 |
T |
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