View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11089_low_9 (Length: 532)
Name: NF11089_low_9
Description: NF11089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11089_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 1 - 517
Target Start/End: Complemental strand, 3088554 - 3088039
Alignment:
| Q |
1 |
ttgtctgaggtgaatccaacgtgcatcggctgatacaaaatgaaagatatctatgataagacaaagggagtaatatgataaaagaaattttaaaaatctt |
100 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3088554 |
ttgtctgaggtgaatccaacgtgcatcggctgatatgaaatgaaagatatctatgataagacaaagggagtaatatgataaaagaaattttaaaaatctt |
3088455 |
T |
|
| Q |
101 |
tagacaaacctggtgaatatctcccatgaagtgtgacaagaacaataatgcctcggtcatattatctgcaatatctccagttaatggtannnnnnnnnnn |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3088454 |
tagacaaacctggtgaatatctcccatgaagtgtgacaagaacaataatgcctcggtcatattatctgcaatatctccagttaatagtattttttttttt |
3088355 |
T |
|
| Q |
201 |
nnaacaaaatctccagtaattaatatcatgaagtaaaataagtctaaaaatttctgaaagggaaaataaatgacagacatgagttccttacatctacgat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3088354 |
t-aacaaaatctccagtaattaatatcatgaagtaaaataagtctaaaaatttctgaaagggaaaaaaaatgacagacatgagttccttacatctacgat |
3088256 |
T |
|
| Q |
301 |
cagatgttccctctttgtaatgagaaagttgagaagtgaaatttttgatagctcctgcaacacacatatcctcatggcagtcccctatgtttgttaacag |
400 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
3088255 |
cagatgttccctctttgtaatgagaaagttgagaagtgaaatttttgatagctcctgcaacacacatgtcctcaaggcagtcccctatgtttgttaacag |
3088156 |
T |
|
| Q |
401 |
caacaaaatgttgcattaaaaataaatatttttgagatttaataagagcacatgacaaaaataactacatatacaaatagtgcttacttgaatattgaaa |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3088155 |
caacaaaatgttgcattaaaaataaatatttttgagatttaatatgagcacatgacaaaaataactacatatacaaatagtgcttacttgaatattgaaa |
3088056 |
T |
|
| Q |
501 |
accacatttttcatctg |
517 |
Q |
| |
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||||||||||||||||| |
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|
| T |
3088055 |
accacatttttcatctg |
3088039 |
T |
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