View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11090_high_1 (Length: 664)
Name: NF11090_high_1
Description: NF11090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11090_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 50751867 - 50752235
Alignment:
| Q |
1 |
tggaccatgcaaatttgttacttttactaattgctattgattgattgatctttgtaccaatcacatttttcttcttcttttttacaaaaattatcttctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50751867 |
tggaccatgcaaatttgttacttttactaattgctattgattgattgatctttgtaccaatcacatttttcttcttcttttttacaaaaattatcttctt |
50751966 |
T |
|
| Q |
101 |
ctctctaaaacccttgttcaatattattgttatataatttctcatcaattttactatcaattcatagtgttgagacttgggtttttgttgaatccatgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50751967 |
ctctctaaaacccttgttcaatattattgttatataatttctcatcaattttactatcaattcatagtgttgagacttgggtttttgttgaatccatgat |
50752066 |
T |
|
| Q |
201 |
ctttgtgcatgatggttgctaaacacaatccaatggaagacaatatggaaatgtgtttgtttcatgatgaaccttttacttctgaaaatagtttaaaaca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||| |
|
|
| T |
50752067 |
ctttgtgcatgatggttgctaaacacaatccaatggaagacaatatggaaatgtgtttgtttc-tgatcaaccttttacttttgaaaatagtttaaaaca |
50752165 |
T |
|
| Q |
301 |
tacaaatattaaaaatagttgtgatggatacggatgtacacgaagtcgaactaaaaagtgagtggccttt |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||| |
|
|
| T |
50752166 |
tacaaatattaaaaatagttgtgatggatacggatgaacatgaagtcgaactagaaagtgagtggccttt |
50752235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 368 - 659
Target Start/End: Original strand, 50752781 - 50753071
Alignment:
| Q |
368 |
tttacaccactactaataagtttagagatttttattacttatatagaaaacaaattgatcaatctcttttttaaaacccatttgttnnnnnnnntggaaa |
467 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
50752781 |
tttacaccactactaataagtttagagatttttattacttatatagaaaacaaattgatcaatctcttttttaaaacccatttgt-caaaaaaatggaaa |
50752879 |
T |
|
| Q |
468 |
atctctccgctcaaaccttgattccacgtgtatggtcttggttcaatacgcgcttgctccatctataaagcacgcacttccttcatctatatattctcta |
567 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
50752880 |
atctctccactcaaaccctgattccacgtgtatggtcttggttcaatacgcgcttgctccatctataaagcacgcacttcctccatctatatattctcta |
50752979 |
T |
|
| Q |
568 |
tccagtacccttattctcacactctcatacattcacgttcttcgcatttattagtctctctcatcacatttcactctctatttcatctctct |
659 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
50752980 |
tccagtacccttattctcacactctcatatattcaccttcttcgcatttattagtctctctcatcacatttcactctctatttcctctctct |
50753071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 89 - 123
Target Start/End: Original strand, 223865 - 223899
Alignment:
| Q |
89 |
aattatcttcttctctctaaaacccttgttcaata |
123 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |
|
|
| T |
223865 |
aattatcttcttctctctaaaactcttgttcaata |
223899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University