View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11090_high_16 (Length: 414)
Name: NF11090_high_16
Description: NF11090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11090_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 17 - 407
Target Start/End: Complemental strand, 43120435 - 43120047
Alignment:
| Q |
17 |
ttatgtagttaaggaatatctattttcacaagttggaacatgttagaatttattcttttattgaaggggaggctgttgcaatgttcaagtctatcaaacg |
116 |
Q |
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| T |
43120435 |
ttatgtaattaaggaatatctattttcacaagttggaacatgttagaatttattcttttattgaaggggaggctgttgcaatgttcaagtctatcaaacg |
43120336 |
T |
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| Q |
117 |
gctagtcaaatgggacctcacaccgtgatttttgagagtgcctcacaaagttgaggaaattcatatcagagagtttcgcgttttaatttcacaaagtaga |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
43120335 |
gctagtcaaatgggacctcacaccgtgatttttgagagtgcctcacaaagttgaggaaattcatatcagag--tttcgcgttttaatttcacaaagtaga |
43120238 |
T |
|
| Q |
217 |
aatttattgtctttatatcccaactttgaggttaagcttaaagaaagtgcttattattacgagatattgttcacaagaaacacaaattttatgtggcaac |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
43120237 |
aatttattgtctttatatcccaactttgaggttaagcttaaagaaagtgcttattattacgagatattgttcacaagaaacactaattttatgtggcaac |
43120138 |
T |
|
| Q |
317 |
aagaaactcatccaaataataaccatatatcctatgtatggtcaaccagaatttgattgatcaaatcccttattttgtaggattcttctct |
407 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43120137 |
atgaaactcatccaaataataaccatatatcctatgtatggtcaaccagaatttgattgatcaaatcccttattttgtaggattcttctct |
43120047 |
T |
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