View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11090_high_22 (Length: 375)
Name: NF11090_high_22
Description: NF11090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11090_high_22 |
 | |
|
| [»] scaffold0425 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0425 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 8 - 194
Target Start/End: Original strand, 4398 - 4576
Alignment:
| Q |
8 |
gatgaatgatcaaaagagagaagaaggaaatgatattaatcaaaagaaatatattaagattattagatagtgcattctttttccttttgaaaaaacaaac |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4398 |
gatgaatgatcaaaagagagaagaaggaaatgatattaatcaaaagaaatatattaagattattagatagtgcattctttttccttttgaaaaaacaaac |
4497 |
T |
|
| Q |
108 |
aaaattaataaaacctgtttcactcacaggtggcggtaaaaagtgactttcccatggtgggaagattatcaagtgtcctatgtgaaa |
194 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4498 |
aaaattaataaaacctgt--------gaggtggcggtaaaaagtgactttctcatggtgggaagattatcaagtgtcctatgtgaaa |
4576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 145 - 201
Target Start/End: Complemental strand, 3882 - 3826
Alignment:
| Q |
145 |
aaaaagtgactttcccatggtgggaagattatcaagtgtcctatgtgaaatgccacc |
201 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
3882 |
aaaatgtgactttcccatggtgggaagattttcaagtgtcccatgtgaaatgccacc |
3826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 121; Significance: 6e-62; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 325520 - 325697
Alignment:
| Q |
16 |
atcaaaagagagaagaaggaaatgatattaatcaaaagaaatatattaagattattagatagtgcattctttttccttttgaaaaaacaaacaaaattaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
325520 |
atcaaaagagagaagaaggaaatgatattaatcaaaagaaatatattacgattattagatattgcattctttttccttttgaaaaaccaaacaaaattaa |
325619 |
T |
|
| Q |
116 |
taaaacctgtttcactcacaggtggcggtaaaaagtgactttcccatggtgggaagattatcaagtgtcctatgtgaaatgccacc |
201 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||||||||||||||| || |||| ||||| |||| |||||||||| |
|
|
| T |
325620 |
taaaac--------ctcacaggtggcggtaaaaagtgattttcccatggtgggaaggttttcaaatgtcccatgttaaatgccacc |
325697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 68 - 170
Target Start/End: Original strand, 34853249 - 34853351
Alignment:
| Q |
68 |
tattagatagtgcattctttttccttttgaaaaaacaaacaaaattaataaaacctgtttcactcacaggtggcggtaaaaagtgactttcccatggtgg |
167 |
Q |
| |
|
||||| ||| |||||||||||| ||||||||||||||||||||| || | ||||| |||||||| ||| ||||| |||||||| ||||||| ||||||| |
|
|
| T |
34853249 |
tattaaatactgcattcttttttcttttgaaaaaacaaacaaaaatagtgaaaccggtttcacttacaagtggcagtaaaaagcaactttcctatggtgg |
34853348 |
T |
|
| Q |
168 |
gaa |
170 |
Q |
| |
|
||| |
|
|
| T |
34853349 |
gaa |
34853351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 200
Target Start/End: Complemental strand, 325384 - 325329
Alignment:
| Q |
145 |
aaaaagtgactttcccatggtgggaagattatcaagtgtcctatgtgaaatgccac |
200 |
Q |
| |
|
|||| |||||||| | |||||||||||||| |||||||||| |||| ||||||||| |
|
|
| T |
325384 |
aaaatgtgacttttctatggtgggaagattttcaagtgtcccatgttaaatgccac |
325329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 118; Significance: 4e-60; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 202 - 356
Target Start/End: Original strand, 38539036 - 38539182
Alignment:
| Q |
202 |
gtatagtatgccttgtacctttctgttgttcctggcttcctgcagtattcctaaacaacaaggcccgttattgatcatcatattgtcttagttgtcgaat |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38539036 |
gtatagtatgccttgtacctttctgttgttccta--------cagtattcctaaacaacaaggcccgttattgatcatcatattgtcttagttgtcgaat |
38539127 |
T |
|
| Q |
302 |
ggtgattggtttttcaggtctcaaaaattgacataacatattatatagattttat |
356 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38539128 |
gatgattggtttttcaggtctcaaaaattgacataacatattatatagattttat |
38539182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 68 - 167
Target Start/End: Complemental strand, 31911672 - 31911573
Alignment:
| Q |
68 |
tattagatagtgcattctttttccttttgaaaaaacaaacaaaattaataaaacctgtttcactcacaggtggcggtaaaaagtgactttcccatggtgg |
167 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||| || | ||||| |||||||| ||| |||| |||||||| ||||| ||||||||| |
|
|
| T |
31911672 |
tattaaatactgcattctttttccttttgaaaaaacaaacaaaaatagtgaaaccggtttcacttacaagtggtagtaaaaagcaacttttccatggtgg |
31911573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 201
Target Start/End: Complemental strand, 50657005 - 50656957
Alignment:
| Q |
153 |
actttcccatggtgggaagattatcaagtgtcctatgtgaaatgccacc |
201 |
Q |
| |
|
||||| |||||||||||||||| ||||||||| ||||||||| ||||| |
|
|
| T |
50657005 |
acttttccatggtgggaagattttcaagtgtctcatgtgaaataccacc |
50656957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 6852535 - 6852647
Alignment:
| Q |
8 |
gatgaatgatcaaaagagagaagaaggaaatgatattaatcaaaagaaatatattaagattattagatagtgcattctttttccttttgaaaaaacaaac |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
6852535 |
gatgaatgatcaaaagagagaagaaggaaatgatattaatcaaaagaaatatattaagattattagatattgcattcttttcccttttgaaaaaacaaac |
6852634 |
T |
|
| Q |
108 |
aaaattaataaaa |
120 |
Q |
| |
|
||||||||||||| |
|
|
| T |
6852635 |
aaaattaataaaa |
6852647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 201
Target Start/End: Complemental strand, 35214632 - 35214584
Alignment:
| Q |
153 |
actttcccatggtgggaagattatcaagtgtcctatgtgaaatgccacc |
201 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||| ||||| |||| |
|
|
| T |
35214632 |
actttcccatggtgggaagattttcaagtgtctcatgttaaatgtcacc |
35214584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 153 - 201
Target Start/End: Original strand, 42423227 - 42423275
Alignment:
| Q |
153 |
actttcccatggtgggaagattatcaagtgtcctatgtgaaatgccacc |
201 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
42423227 |
actttcccatggtgggaagattttcaagtgtctcatgtgaaatgccacc |
42423275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University