View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11090_high_27 (Length: 345)
Name: NF11090_high_27
Description: NF11090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11090_high_27 |
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| [»] scaffold0110 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 336
Target Start/End: Original strand, 45126802 - 45127120
Alignment:
| Q |
18 |
caaaggatgaagcctaataccacaatagcaataaaccacatcacaagtctcattaggttgaaaaagttcaatccctctaactttcaaagcctttcccaaa |
117 |
Q |
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| T |
45126802 |
caaaggatgaagcctaataccacaatagcaataaaccacatcacaagtctcattaggttgaaaaagttcaatccctctaactttcaaagcctttcccaaa |
45126901 |
T |
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| Q |
118 |
tcactttcacatgtttcagaatcatctggtaacaaaggcatgtcataggatgtagtgtgtccatgttcaaatccaccaagagcagtggcagagtaagcag |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45126902 |
tcactttcacatgtttcagaatcatctggtaacaaaggcatgtcatatgatgtagtgtgtccatgttcaaatccaccaagagcagtggcagagtaagcag |
45127001 |
T |
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| Q |
218 |
aatatagccacgcagctagagcaggacaacatcggctacggtgaagttcatcatcagcagcatcatgtttgttggatttggaactgcatgcgttttttat |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
45127002 |
aatatagccacgcagctagagcaggacaacatcggctacggtgaagttcatcatcagcagcatcatgtttgttggatttggaactgcatgcgtttttgat |
45127101 |
T |
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| Q |
318 |
tccattcaagtgttcatct |
336 |
Q |
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| T |
45127102 |
tccattcaagtgttcatct |
45127120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 162
Target Start/End: Complemental strand, 3701 - 3558
Alignment:
| Q |
19 |
aaaggatgaagcctaataccacaatagcaataaaccacatcacaagtctcattaggttgaaaaagttcaatccctctaactttcaaagcctttcccaaat |
118 |
Q |
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|||||||| || ||||| |||||||| ||||| |||| ||||||| ||||||| |||| | ||| ||||| ||||| ||||||||||||||| ||||| |
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| T |
3701 |
aaaggatgcagtctaattccacaataacaatataccaaatcacaactctcatttggttttataagctcaattcctctcactttcaaagccttttccaaac |
3602 |
T |
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| Q |
119 |
cactttcacatgtttcagaatcatctggtaacaaaggcatgtca |
162 |
Q |
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| T |
3601 |
catccacacatgtttctgagtcatctggcaccaaaggcatgtca |
3558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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