View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11090_high_33 (Length: 320)

Name: NF11090_high_33
Description: NF11090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11090_high_33
NF11090_high_33
[»] chr3 (8 HSPs)
chr3 (154-280)||(29438248-29438374)
chr3 (154-287)||(43615679-43615812)
chr3 (19-85)||(43616161-43616227)
chr3 (41-83)||(42914513-42914555)
chr3 (87-125)||(29438417-29438455)
chr3 (85-125)||(43615840-43615880)
chr3 (212-274)||(11985585-11985647)
chr3 (41-85)||(29313164-29313208)
[»] chr7 (9 HSPs)
chr7 (163-275)||(19362399-19362511)
chr7 (154-274)||(44598444-44598563)
chr7 (159-275)||(47967521-47967636)
chr7 (200-275)||(9698331-9698406)
chr7 (202-274)||(19113527-19113598)
chr7 (84-125)||(31642754-31642795)
chr7 (85-125)||(44598579-44598619)
chr7 (85-122)||(9698211-9698248)
chr7 (42-85)||(23705386-23705429)
[»] chr1 (8 HSPs)
chr1 (167-275)||(52453923-52454031)
chr1 (160-275)||(170872-170987)
chr1 (164-275)||(4808345-4808456)
chr1 (200-275)||(28702407-28702478)
chr1 (85-122)||(171039-171076)
chr1 (85-125)||(52453836-52453876)
chr1 (37-70)||(26673786-26673819)
chr1 (29-85)||(46906015-46906071)
[»] chr6 (3 HSPs)
chr6 (177-275)||(14533478-14533576)
chr6 (85-125)||(14533644-14533684)
chr6 (200-260)||(20613247-20613307)
[»] chr8 (3 HSPs)
chr8 (202-274)||(27084472-27084544)
chr8 (41-85)||(33285098-33285142)
chr8 (85-125)||(25430942-25430982)
[»] chr2 (6 HSPs)
chr2 (168-275)||(17623420-17623527)
chr2 (19-85)||(32532765-32532831)
chr2 (160-252)||(14735690-14735782)
chr2 (193-260)||(5887872-5887939)
chr2 (193-255)||(17303255-17303317)
chr2 (37-85)||(12287972-12288020)
[»] chr4 (6 HSPs)
chr4 (200-275)||(13564708-13564783)
chr4 (85-122)||(13564588-13564625)
chr4 (150-255)||(26494421-26494525)
chr4 (165-253)||(31523046-31523134)
chr4 (161-227)||(46852108-46852174)
chr4 (207-260)||(29096115-29096168)
[»] chr5 (6 HSPs)
chr5 (19-85)||(4870217-4870283)
chr5 (26-85)||(3631947-3632006)
chr5 (18-85)||(13106135-13106202)
chr5 (165-260)||(15974121-15974216)
chr5 (200-260)||(18768380-18768440)
chr5 (43-85)||(13036145-13036187)
[»] scaffold0060 (1 HSPs)
scaffold0060 (200-274)||(35661-35735)


Alignment Details
Target: chr3 (Bit Score: 103; Significance: 3e-51; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 154 - 280
Target Start/End: Complemental strand, 29438374 - 29438248
Alignment:
Q  154 ttcatggtaccccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgc 253  Q
    |||||||||||||||||||||| || || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29438374 ttcatggtaccccctttccactgcaccagctcaattcaaattgatattatactcctaatatagtatataaggaaactttgggggataccatggcacctgc 29438275  T
Q  254 ctacccccaaagagatccgcccttgcc 280  Q
    || ||||||||||||||||||| ||||    
T  29438274 ctgcccccaaagagatccgcccctgcc 29438248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 154 - 287
Target Start/End: Complemental strand, 43615812 - 43615679
Alignment:
Q  154 ttcatggtaccccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgc 253  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||    
T  43615812 ttcatggtaccccctttccactgcagcaactcaattcagattgatgttatactcctaatatagtatataaggaaactttaggggataacatgacacctgc 43615713  T
Q  254 ctacccccaaagagatccgcccttgccctcccgg 287  Q
    || |||||||| ||| ||| || |||||||||||    
T  43615712 ctgcccccaaaaagacccgtccatgccctcccgg 43615679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 43616227 - 43616161
Alignment:
Q  19 tcaaggtcctctcaattgttggcatgtttatgcaactatcattagaaatatcaacgatctccttaat 85  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  43616227 tcaaggtcctctcaattcttggcatgtttatgcaactatcattagaaatatcaacgatctccttaat 43616161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 41 - 83
Target Start/End: Original strand, 42914513 - 42914555
Alignment:
Q  41 catgtttatgcaactatcattagaaatatcaacgatctcctta 83  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  42914513 catgtttatgcaactatcattagaaatatcaatgatctcctta 42914555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 125
Target Start/End: Complemental strand, 29438455 - 29438417
Alignment:
Q  87 ttttaaatacgatatgcaataatagaagattaaacaagt 125  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  29438455 ttttaaatacaatatgcaataatagaagattaaacaagt 29438417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 43615880 - 43615840
Alignment:
Q  85 ttttttaaatacgatatgcaataatagaagattaaacaagt 125  Q
    |||||||||||||||||  ||||||||||||||||||||||    
T  43615880 ttttttaaatacgatattgaataatagaagattaaacaagt 43615840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 274
Target Start/End: Original strand, 11985585 - 11985647
Alignment:
Q  212 tatagtatataaggaaactttgggggataccatggcacctgcctacccccaaagagatccgcc 274  Q
    |||||||||||||  ||  |||||||||||| |||| |||||| ||| |||||||||||||||    
T  11985585 tatagtatataagttaatcttgggggataccgtggctcctgccgaccaccaaagagatccgcc 11985647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 29313164 - 29313208
Alignment:
Q  41 catgtttatgcaactatcattagaaatatcaacgatctccttaat 85  Q
    ||||||||||| |||||||| |||||||| || ||||||||||||    
T  29313164 catgtttatgccactatcatcagaaatattaaggatctccttaat 29313208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 3e-45; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 163 - 275
Target Start/End: Complemental strand, 19362511 - 19362399
Alignment:
Q  163 ccccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctaccccca 262  Q
    ||||||||||||| ||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  19362511 ccccctttccactgcagcagctcaattcagattgatattatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctgccccca 19362412  T
Q  263 aagagatccgccc 275  Q
    |||||||||||||    
T  19362411 aagagatccgccc 19362399  T

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Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 154 - 274
Target Start/End: Complemental strand, 44598563 - 44598444
Alignment:
Q  154 ttcatggtaccccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgc 253  Q
    |||| ||||||||||||||||| ||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  44598563 ttcacggtaccccctttccactgcagcagctcaattcaaattaatattatactcctaatatagtatataaggaaactttgggggataccatgacacctgc 44598464  T
Q  254 ctacccccaaagagatccgcc 274  Q
    ||| |||||||||||| ||||    
T  44598463 cta-ccccaaagagatacgcc 44598444  T

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Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 159 - 275
Target Start/End: Original strand, 47967521 - 47967636
Alignment:
Q  159 ggtaccccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacc 258  Q
    |||||||||||||||||  |||| ||||||| | ||| ||||||||||||||||||| |||||||||||| |||| ||||||||||||||| || || ||    
T  47967521 ggtaccccctttccactggagcagctcaatttagatttatgttatactcctaatataatatataaggaaattttgagggataccatggcacttg-ctgcc 47967619  T
Q  259 cccaaagagatccgccc 275  Q
    |||||| ||||||||||    
T  47967620 cccaaatagatccgccc 47967636  T

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Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 200 - 275
Target Start/End: Original strand, 9698331 - 9698406
Alignment:
Q  200 ttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccccaaagagatccgccc 275  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||||| ||  |||||||||||||||||||    
T  9698331 ttatactcttaatatagtatataaggaaactttggaggataccatggcacctaccgtcccccaaagagatccgccc 9698406  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 202 - 274
Target Start/End: Original strand, 19113527 - 19113598
Alignment:
Q  202 atactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccccaaagagatccgcc 274  Q
    |||| ||||||| |||||||||||||| ||||||| || ||||| |||| |||||||||||||||||||||||    
T  19113527 atacacctaatacagtatataaggaaaatttgggg-atgccatgacaccagcctacccccaaagagatccgcc 19113598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 125
Target Start/End: Complemental strand, 31642795 - 31642754
Alignment:
Q  84 attttttaaatacgatatgcaataatagaagattaaacaagt 125  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  31642795 attttttaaatacaatatgcaataatagaagattaaacaagt 31642754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 44598619 - 44598579
Alignment:
Q  85 ttttttaaatacgatatgcaataatagaagattaaacaagt 125  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  44598619 ttttttaaatacaatatgcaataatagaagattaaacaagt 44598579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 122
Target Start/End: Original strand, 9698211 - 9698248
Alignment:
Q  85 ttttttaaatacgatatgcaataatagaagattaaaca 122  Q
    |||||||||||| |||||||||||||||||||||||||    
T  9698211 ttttttaaatacaatatgcaataatagaagattaaaca 9698248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 85
Target Start/End: Complemental strand, 23705429 - 23705386
Alignment:
Q  42 atgtttatgcaactatcattagaaatatcaacgatctccttaat 85  Q
    |||||||||||||||||| |||||||||||| |||||| |||||    
T  23705429 atgtttatgcaactatcaatagaaatatcaatgatctctttaat 23705386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 167 - 275
Target Start/End: Original strand, 52453923 - 52454031
Alignment:
Q  167 ctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccccaaaga 266  Q
    ||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||    
T  52453923 ctttccactgcagcagctcaattcaaattgatattatactcctaatatagtatataaggaaactttgggggataccatgacacttgcctgcccccaaaga 52454022  T
Q  267 gatccgccc 275  Q
    |||||||||    
T  52454023 gatccgccc 52454031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 160 - 275
Target Start/End: Complemental strand, 170987 - 170872
Alignment:
Q  160 gtaccccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctaccc 259  Q
    ||||||||| |||||| || ||||||||||| | ||| | |||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||    
T  170987 gtaccccctctccactgcaacaactcaattctagttgttattatactcctaatatactatataaggaaactttgggggatatcatggcacctgccttccc 170888  T
Q  260 ccaaagagatccgccc 275  Q
    |||||||||| |||||    
T  170887 ccaaagagattcgccc 170872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 164 - 275
Target Start/End: Complemental strand, 4808456 - 4808345
Alignment:
Q  164 cccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccccaa 263  Q
    ||||||||||||||||||| ||||||| | ||| |  |||||| ||||||| ||||||||||||||||||| |||||||| | ||||||||| ||| |||    
T  4808456 cccctttccactacagcaaatcaattctagttgttaatatacttctaatatggtatataaggaaactttggaggataccacgacacctgcctgccctcaa 4808357  T
Q  264 agagatccgccc 275  Q
    |||||| |||||    
T  4808356 agagattcgccc 4808345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 200 - 275
Target Start/End: Original strand, 28702407 - 28702478
Alignment:
Q  200 ttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccccaaagagatccgccc 275  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||| ||||||    |||||||||||||||||||    
T  28702407 ttatactcttaatatagtatataaggaaactttgagggataccatgtcacctg----cccccaaagagatccgccc 28702478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 122
Target Start/End: Complemental strand, 171076 - 171039
Alignment:
Q  85 ttttttaaatacgatatgcaataatagaagattaaaca 122  Q
    |||||||||||| |||||||||||||||||||||||||    
T  171076 ttttttaaatacaatatgcaataatagaagattaaaca 171039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 125
Target Start/End: Original strand, 52453836 - 52453876
Alignment:
Q  85 ttttttaaatacgatatgcaataatagaagattaaacaagt 125  Q
    |||||||||||| |||||| |||||||||||||||||||||    
T  52453836 ttttttaaatacaatatgctataatagaagattaaacaagt 52453876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 70
Target Start/End: Original strand, 26673786 - 26673819
Alignment:
Q  37 ttggcatgtttatgcaactatcattagaaatatc 70  Q
    |||||||||||||||||||| |||||||||||||    
T  26673786 ttggcatgtttatgcaactaacattagaaatatc 26673819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 46906015 - 46906071
Alignment:
Q  29 ctcaattgttggcatgtttatgcaactatcattagaaatatcaacgatctccttaat 85  Q
    ||||||| ||||||||||||||| |||| ||| |||||| | || ||||||||||||    
T  46906015 ctcaattcttggcatgtttatgccactaccatcagaaatgttaaggatctccttaat 46906071  T

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Target: chr6 (Bit Score: 79; Significance: 6e-37; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 177 - 275
Target Start/End: Complemental strand, 14533576 - 14533478
Alignment:
Q  177 cagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccccaaagagatccgccc 275  Q
    ||||| ||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  14533576 cagcagctcaatttatattgatgttatactcctaatatagtatatcaggaaactttgggggataccatggcacctgcctgcccccaaagagatccgccc 14533478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 14533684 - 14533644
Alignment:
Q  85 ttttttaaatacgatatgcaataatagaagattaaacaagt 125  Q
    |||||||||||| |||||||| |||||||||||||||||||    
T  14533684 ttttttaaatacaatatgcaacaatagaagattaaacaagt 14533644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 260
Target Start/End: Original strand, 20613247 - 20613307
Alignment:
Q  200 ttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccc 260  Q
    |||||| ||||||||||||||||||| || | |||||||| ||||||||||| ||| ||||    
T  20613247 ttatacacctaatatagtatataagggaaatctgggggatgccatggcacctacctgcccc 20613307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 202 - 274
Target Start/End: Original strand, 27084472 - 27084544
Alignment:
Q  202 atactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccccaaagagatccgcc 274  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  27084472 atacacctaatatagtatataaggaaactttgggggatgccatggcacctgccttcccccaaagagatccgcc 27084544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 33285098 - 33285142
Alignment:
Q  41 catgtttatgcaactatcattagaaatatcaacgatctccttaat 85  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  33285098 catgtttatgcaactatcattagaaatatcaacgatctgcttaat 33285142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 25430982 - 25430942
Alignment:
Q  85 ttttttaaatacgatatgcaataatagaagattaaacaagt 125  Q
    |||||| ||||| ||||||||||||||||||||||||||||    
T  25430982 tttttttaatacaatatgcaataatagaagattaaacaagt 25430942  T

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Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 168 - 275
Target Start/End: Original strand, 17623420 - 17623527
Alignment:
Q  168 tttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccccaaagag 267  Q
    |||||||| ||||| ||||||||   ||| | ||||||| |||||||||||||||||||||||||||||||||||||| ||| || || |||||||||||    
T  17623420 tttccactgcagcagctcaattctggttgttattatacttctaatatagtatataaggaaactttgggggataccatgacacatgtctgcccccaaagag 17623519  T
Q  268 atccgccc 275  Q
    ||||||||    
T  17623520 atccgccc 17623527  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 32532831 - 32532765
Alignment:
Q  19 tcaaggtcctctcaattgttggcatgtttatgcaactatcattagaaatatcaacgatctccttaat 85  Q
    ||||| ||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  32532831 tcaagctcctctcaactcttggcatgtttatgcaactatcattagaaatatcaatgatctccttaat 32532765  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 252
Target Start/End: Original strand, 14735690 - 14735782
Alignment:
Q  160 gtaccccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctg 252  Q
    ||||||| ||||||| ||| ||||  ||||| ||||||| | |||| |||||||||||||||||| ||| | ||||| || ||||||| ||||    
T  14735690 gtaccccatttccacaacaacaaccaaattctaattgatataatacacctaatatagtatataagaaaaatctggggaatgccatggcccctg 14735782  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 260
Target Start/End: Complemental strand, 5887939 - 5887872
Alignment:
Q  193 attgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccc 260  Q
    |||||| |||||| |||||| |||||||||||| || | |||||||| ||||||||||| ||| ||||    
T  5887939 attgatattatacacctaatgtagtatataagggaaatctgggggatgccatggcacctacctgcccc 5887872  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 255
Target Start/End: Original strand, 17303255 - 17303317
Alignment:
Q  193 attgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcct 255  Q
    |||||| |||||| ||||||||||||||||||| || | |||||||| ||||  |||||||||    
T  17303255 attgatattatacacctaatatagtatataagggaaatctgggggatgccataacacctgcct 17303317  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 12288020 - 12287972
Alignment:
Q  37 ttggcatgtttatgcaactatcattagaaatatcaacgatctccttaat 85  Q
    ||||||||||||||| ||||||||||||||| |  | ||||||||||||    
T  12288020 ttggcatgtttatgccactatcattagaaatgttgaagatctccttaat 12287972  T

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Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 200 - 275
Target Start/End: Original strand, 13564708 - 13564783
Alignment:
Q  200 ttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccccaaagagatccgccc 275  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||||| ||  |||||||||||||||||||    
T  13564708 ttatactcttaatatagtatataaggaaactttggaggataccatggcacctaccgtcccccaaagagatccgccc 13564783  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 122
Target Start/End: Original strand, 13564588 - 13564625
Alignment:
Q  85 ttttttaaatacgatatgcaataatagaagattaaaca 122  Q
    |||||||||||| |||||||||||||||||||||||||    
T  13564588 ttttttaaatacaatatgcaataatagaagattaaaca 13564625  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 150 - 255
Target Start/End: Complemental strand, 26494525 - 26494421
Alignment:
Q  150 ccagttcatggtaccccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcac 249  Q
    ||||||||||| ||||| || ||||| || ||||| ||||   |||||  |||||| ||||||||||||||||||| || | ||||||||  ||||||||    
T  26494525 ccagttcatggcacccc-ttaccactgcaacaactaaattattattgaaattatacacctaatatagtatataagggaaatctgggggatgtcatggcac 26494427  T
Q  250 ctgcct 255  Q
    ||||||    
T  26494426 ctgcct 26494421  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 253
Target Start/End: Complemental strand, 31523134 - 31523046
Alignment:
Q  165 ccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgc 253  Q
    ||||| ||||| ||| | || ||||| | ||| ||| |||| ||||||| | ||||||||||||||||||||||| ||||| |||||||    
T  31523134 cccttaccactgcagtagctgaattctagttgttgtaatacacctaatacaatatataaggaaactttgggggatgccatgacacctgc 31523046  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 227
Target Start/End: Original strand, 46852108 - 46852174
Alignment:
Q  161 taccccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaa 227  Q
    |||| |||||||||| |||||||| ||||| ||||| | | |||| ||||||||| |||||||||||    
T  46852108 taccgcctttccactgcagcaactgaattctaattgttataatacacctaatataatatataaggaa 46852174  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 260
Target Start/End: Complemental strand, 29096168 - 29096115
Alignment:
Q  207 cctaatatagtatataaggaaactttgggggataccatggcacctgcctacccc 260  Q
    |||||||||||| |||||| || | |||||||| ||||||||||||||| ||||    
T  29096168 cctaatatagtaaataagggaaatctgggggatgccatggcacctgcctgcccc 29096115  T

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Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 4870283 - 4870217
Alignment:
Q  19 tcaaggtcctctcaattgttggcatgtttatgcaactatcattagaaatatcaacgatctccttaat 85  Q
    ||||| ||||||||||  ||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  4870283 tcaagctcctctcaatgcttgacatgtttatgcaactatcattagaaatatcaacaatctccttaat 4870217  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 3632006 - 3631947
Alignment:
Q  26 cctctcaattgttggcatgtttatgcaactatcattagaaatatcaacgatctccttaat 85  Q
    |||||||||  ||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  3632006 cctctcaatgtttgacatgtttatgcaactatcattagaaacatcaacgatctccttaat 3631947  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 13106202 - 13106135
Alignment:
Q  18 atcaaggtcctctcaattgttggcatgtttatgcaactatcattagaaatatcaacgatctccttaat 85  Q
    |||||| ||||| ||||  ||| | ||||||||||| ||||||||||||||| |||||||||||||||    
T  13106202 atcaagctcctcccaatgtttgacgtgtttatgcaattatcattagaaatattaacgatctccttaat 13106135  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 260
Target Start/End: Original strand, 15974121 - 15974216
Alignment:
Q  165 ccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccc 260  Q
    ||||| |||||||| ||||| ||||   |||||  | |||| |||||||||||||||||||||| | | |||||| ||||||||||||||| ||||    
T  15974121 cccttaccactacaacaactaaattgttattgaaatcatacacctaatatagtatataaggaaaatctaggggatgccatggcacctgcctgcccc 15974216  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 260
Target Start/End: Original strand, 18768380 - 18768440
Alignment:
Q  200 ttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccc 260  Q
    |||||| ||||||||||||||||||| ||   |||||||| ||||||||||||||| ||||    
T  18768380 ttatacacctaatatagtatataagggaaacctgggggatgccatggcacctgcctgcccc 18768440  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 85
Target Start/End: Complemental strand, 13036187 - 13036145
Alignment:
Q  43 tgtttatgcaactatcattagaaatatcaacgatctccttaat 85  Q
    ||||||| |||||||||||| |||||| |||||||||||||||    
T  13036187 tgtttatacaactatcattaaaaatattaacgatctccttaat 13036145  T

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Target: scaffold0060 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 274
Target Start/End: Complemental strand, 35735 - 35661
Alignment:
Q  200 ttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccccaaagagatccgcc 274  Q
    |||||| ||||||||||||||||||| || | |||||||| ||||||||| || || ||||  || |||||||||    
T  35735 ttatacacctaatatagtatataagggaaatctgggggatgccatggcacttggctgccccttaaaagatccgcc 35661  T

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