View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11090_high_37 (Length: 301)
Name: NF11090_high_37
Description: NF11090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11090_high_37 |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 15 - 285
Target Start/End: Original strand, 14878484 - 14878754
Alignment:
| Q |
15 |
atgaagaaagtgcggtgaaccatgtcgtctaagggaaacatggttcctttgttgtcgggttctggatcgtattcacgatgagtacatgtcactcttggtg |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
14878484 |
atgaagaaagtgcggtgaaccatgtcgtctaagggaaacatggttcctttgttgtcgggttctggatcgtattcacgatgattatatgtcactcttggtg |
14878583 |
T |
|
| Q |
115 |
gatccctagcgttaagaagctctctacaccacaccggtgagattgaaggtttgctcatcccacgagatatctctcctaaggcagtcaagaattgaagcat |
214 |
Q |
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||||||| || |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
14878584 |
gatcccttgcattaagaagctctctgctccacaccggtgagattgaaggtttgctcatcccacgagatatctctcctaaggcactcaagaattgaagcat |
14878683 |
T |
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| Q |
215 |
gcctgatgcatcactcaatgtatggttcatacgaagagcaaagataaaaccactacacttgaggcgtgtta |
285 |
Q |
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||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
14878684 |
gcccgatgcatcactcaatgtatggttcatacgaatagcaaagataaaaccaccacacttgaggcgtgtta |
14878754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 15 - 285
Target Start/End: Complemental strand, 14759255 - 14758985
Alignment:
| Q |
15 |
atgaagaaagtgcggtgaaccatgtcgtctaagggaaacatggttcctttgttgtcgggttctggatcgtattcacgatgagtacatgtcactcttggtg |
114 |
Q |
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| T |
14759255 |
atgaagaaagtgcggtgaaccatgtcgtctaagggaaacatggttcctttgttgtcgggttctggatcgtattcacgatgagtacatgtcactattggtg |
14759156 |
T |
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| Q |
115 |
gatccctagcgttaagaagctctctacaccacaccggtgagattgaaggtttgctcatcccacgagatatctctcctaaggcagtcaagaattgaagcat |
214 |
Q |
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| T |
14759155 |
gatcccttgcattaagaagctctctgctccacactggtgagattgaaggtttactcatcccacgagatatttctcctaaggcattcaagaattgaagcat |
14759056 |
T |
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| Q |
215 |
gcctgatgcatcactcaatgtatggttcatacgaagagcaaagataaaaccactacacttgaggcgtgtta |
285 |
Q |
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|||||| ||||||||| ||||||||||||||| | |||||| || ||||||| ||||||||||||||||| |
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| T |
14759055 |
acctgatccatcactcattgtatggttcatacggaaagcaaaaatgaaaccaccacacttgaggcgtgtta |
14758985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 17 - 277
Target Start/End: Original strand, 14786632 - 14786892
Alignment:
| Q |
17 |
gaagaaagtgcggtgaaccatgtcgtctaagggaaacatggttcctttgttgtcg-ggttctggatcgtattcacgatgagtacatgtcactcttggtgg |
115 |
Q |
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| T |
14786632 |
gaagaaagtgtgatgaaccatgtcgtctaagggaatgaccgttcctttgtt-tcgtggtacttcttcatattcgtgatgagtacacgtaattcttggtgg |
14786730 |
T |
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| Q |
116 |
atccctagcgttaagaagctctctacaccacaccggtgagattgaaggtttgctcatcccacgagatatctctcctaaggcagtcaagaattgaagcatg |
215 |
Q |
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| T |
14786731 |
gttccttgcatttagaagctctctacaccacaccggtgagattgaaggttcgttcattccgcgagatatttctcctaaggcacttaagaatttaaataaa |
14786830 |
T |
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| Q |
216 |
cctgatgcatcactcaatgtatggttcatacgaagagcaaagataaaaccactacacttgag |
277 |
Q |
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| T |
14786831 |
cctgatgagtcgctaattgtatggtttagacgaagagcaaatatgaaaccaccacacttgag |
14786892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 285
Target Start/End: Original strand, 14767547 - 14767811
Alignment:
| Q |
21 |
aaagtgcggtgaaccatgtcgtctaagggaaacatggttcctttgttgtcgggttctggatcgtattcacgatgagtacatgtcactcttggtggatccc |
120 |
Q |
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|||| ||| ||| ||||||| |||||||||| || ||||||||| ||||||| || | ||||||||||||||||| ||||| ||||| |||||||||| |
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| T |
14767547 |
aaagagcgatgagccatgtcatctaagggaataattgttcctttggtgtcgggaacttgttcgtattcacgatgagtgcatgttactctcggtggatccc |
14767646 |
T |
|
| Q |
121 |
tagcgttaagaagctctctacaccacaccggtgagattgaaggtttgctcatcccacgagatatctctcctaaggcagtcaagaattgaagcatgcctga |
220 |
Q |
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| | || |||||||| ||| ||| |||||| |||||||||||| ||||||| | ||| || || ||||||||| ||| |||||| | || || | |
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| T |
14767647 |
ttgaatttagaagctccctatgccataccggtaagattgaaggttcattcatcccgcaagaaatttcacctaaggcactcatgaattggaccaaacccgc |
14767746 |
T |
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| Q |
221 |
tgcatcactcaatgtatggttcatacgaagagcaaagataaaaccactacacttgaggcgtgtta |
285 |
Q |
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| T |
14767747 |
tgcatcgctcattgtatggtttagacgaagagcaaaaatgaaaccaccgcacttgaggcgtgtta |
14767811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 57 - 267
Target Start/End: Original strand, 14873664 - 14873874
Alignment:
| Q |
57 |
gttcctttgttgtcgggttctggatcgtattcacgatgagtacatgtcactcttggtggatccctagcgttaagaagctctctacaccacaccggtgaga |
156 |
Q |
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| T |
14873664 |
gttcctttggtgtcgggaacttgttcatattcatgatgagtgcatgttactcttggtggatcccttgcgtttagaagctctctatgccatactggtgaga |
14873763 |
T |
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| Q |
157 |
ttgaaggtttgctcatcccacgagatatctctcctaaggcagtcaagaattgaagcatgcctgatgcatcactcaatgtatggttcatacgaagagcaaa |
256 |
Q |
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| T |
14873764 |
ttgaaggtttgttcatcccacgtgaaattttgcctaaggcattcatgaattggaccaaaccagcagcgtcactcatcgtatggtttagacgaagagcaaa |
14873863 |
T |
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| Q |
257 |
gataaaaccac |
267 |
Q |
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| T |
14873864 |
aatgaaaccac |
14873874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 28 - 285
Target Start/End: Original strand, 84558 - 84815
Alignment:
| Q |
28 |
ggtgaaccatgtcgtctaagggaaacatggttcctttgttgtcgggttctggatcgtattcacgatgagtacatgtcactcttggtggatccctagcgtt |
127 |
Q |
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|||| |||||||| ||||||| ||| || || |||||||||| |||||||| |||||||||||||||||||| ||||||||||||| |||||| ||| | |
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| T |
84558 |
ggtggaccatgtcatctaaggaaaatgtgtttgctttgttgtcaggttctggttcgtattcacgatgagtacacgtcactcttggtgcatcccttgcgct |
84657 |
T |
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| Q |
128 |
aagaagctctctacaccacaccggtgagattgaaggtttgctcatcccacgagatatctctcctaaggcagtcaagaattgaagcatgcctgatgcatca |
227 |
Q |
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| T |
84658 |
tagaatttctctgcaccacactggtgagattgaaggttttctcataccctgagatatttctgctaaagcactcatgaattgaactatacctgatccatca |
84757 |
T |
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| Q |
228 |
ctcaatgtatggttcatacgaagagcaaagataaaaccactacacttgaggcgtgtta |
285 |
Q |
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||| ||||||||| | |||||||||||| || ||||| ||||| ||||||||||||| |
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| T |
84758 |
gtcattgtatggttgaaacgaagagcaaaaatgaaacctctacatttgaggcgtgtta |
84815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 12000131 - 12000229
Alignment:
| Q |
17 |
gaagaaagtgcggtgaaccatgtcgtctaagggaaacatggttcc---tttgttgtcgggttctggatcgtattcacgatgagtacatgtcactcttgg |
112 |
Q |
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||||||||||||||| | |||||| |||||| || | |||||||| ||||||||| |||||||| |||||| | ||||||| |||||||| |||| |
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| T |
12000131 |
gaagaaagtgcggtgcatcatgtcatctaagagataaatggttcctaatttgttgtccggttctggttcgtatccgtgatgagtgtatgtcacttttgg |
12000229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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