View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11090_high_39 (Length: 297)

Name: NF11090_high_39
Description: NF11090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11090_high_39
NF11090_high_39
[»] chr5 (19 HSPs)
chr5 (1-282)||(14574282-14574560)
chr5 (3-50)||(19783649-19783696)
chr5 (3-51)||(35109399-35109447)
chr5 (6-49)||(31159430-31159473)
chr5 (3-52)||(8545003-8545052)
chr5 (4-52)||(12285617-12285665)
chr5 (3-51)||(16485977-16486025)
chr5 (1-57)||(40445976-40446032)
chr5 (4-50)||(1476125-1476171)
chr5 (1-51)||(6898020-6898070)
chr5 (3-52)||(21212067-21212117)
chr5 (1-39)||(25607070-25607108)
chr5 (3-45)||(32460016-32460058)
chr5 (2-52)||(36623187-36623237)
chr5 (4-49)||(5001556-5001601)
chr5 (3-52)||(13864342-13864391)
chr5 (1-50)||(22498942-22498991)
chr5 (4-57)||(30893926-30893979)
chr5 (4-52)||(23118066-23118114)
[»] chr4 (18 HSPs)
chr4 (140-277)||(977374-977512)
chr4 (1-51)||(19124634-19124684)
chr4 (2-51)||(11269693-11269742)
chr4 (3-51)||(7371562-7371610)
chr4 (74-133)||(978621-978680)
chr4 (10-57)||(24837494-24837541)
chr4 (3-58)||(36203228-36203283)
chr4 (7-50)||(40847085-40847128)
chr4 (1-51)||(18635529-18635579)
chr4 (3-57)||(29908049-29908103)
chr4 (1-51)||(38374956-38375006)
chr4 (2-51)||(43183006-43183055)
chr4 (3-52)||(49041995-49042044)
chr4 (3-59)||(7030907-7030963)
chr4 (1-37)||(11144677-11144713)
chr4 (4-52)||(41536920-41536968)
chr4 (3-51)||(42316838-42316886)
chr4 (3-51)||(53530008-53530056)
[»] chr6 (14 HSPs)
chr6 (2-52)||(7081667-7081717)
chr6 (1-57)||(12412270-12412326)
chr6 (1-52)||(8810638-8810689)
chr6 (3-51)||(4450261-4450309)
chr6 (1-48)||(334142-334189)
chr6 (3-57)||(5040847-5040901)
chr6 (3-61)||(18256872-18256930)
chr6 (7-52)||(404161-404206)
chr6 (10-51)||(6470637-6470678)
chr6 (3-52)||(13496114-13496163)
chr6 (4-57)||(15291705-15291758)
chr6 (4-52)||(331901-331949)
chr6 (3-51)||(8381208-8381256)
chr6 (1-57)||(29335587-29335643)
[»] chr1 (25 HSPs)
chr1 (3-52)||(29506825-29506874)
chr1 (1-50)||(34848476-34848525)
chr1 (1-52)||(26705598-26705649)
chr1 (1-52)||(44220985-44221036)
chr1 (1-51)||(17651392-17651442)
chr1 (3-49)||(23405372-23405418)
chr1 (7-57)||(30279638-30279688)
chr1 (4-50)||(43843891-43843937)
chr1 (3-52)||(563199-563248)
chr1 (1-50)||(12213993-12214042)
chr1 (1-50)||(28039872-28039921)
chr1 (4-49)||(30548106-30548151)
chr1 (6-51)||(47835732-47835777)
chr1 (3-52)||(49875613-49875662)
chr1 (6-57)||(1761454-1761506)
chr1 (3-50)||(10654461-10654509)
chr1 (1-57)||(16033462-16033518)
chr1 (4-52)||(16967209-16967257)
chr1 (3-51)||(19620575-19620623)
chr1 (4-52)||(24978242-24978290)
chr1 (3-51)||(31401667-31401715)
chr1 (3-51)||(32950775-32950823)
chr1 (3-51)||(47071972-47072020)
chr1 (3-59)||(49183164-49183220)
chr1 (1-57)||(52267757-52267813)
[»] chr8 (11 HSPs)
chr8 (4-52)||(17062354-17062402)
chr8 (4-52)||(17585956-17586004)
chr8 (3-52)||(1877676-1877725)
chr8 (3-50)||(6248301-6248348)
chr8 (4-50)||(36392837-36392883)
chr8 (3-52)||(11771705-11771754)
chr8 (4-57)||(29924932-29924985)
chr8 (4-53)||(30071531-30071580)
chr8 (1-57)||(27191751-27191807)
chr8 (4-52)||(28084280-28084328)
chr8 (1-57)||(39433403-39433459)
[»] chr3 (9 HSPs)
chr3 (1-57)||(7824800-7824856)
chr3 (1-59)||(11574244-11574302)
chr3 (2-59)||(1149082-1149139)
chr3 (4-57)||(23629760-23629813)
chr3 (4-57)||(43011315-43011368)
chr3 (7-52)||(44799073-44799118)
chr3 (4-52)||(5117206-5117254)
chr3 (4-52)||(29791774-29791822)
chr3 (2-50)||(38573586-38573634)
[»] scaffold0896 (1 HSPs)
scaffold0896 (1-52)||(3139-3190)
[»] chr7 (18 HSPs)
chr7 (1-52)||(45979111-45979162)
chr7 (1-49)||(7481226-7481274)
chr7 (1-52)||(5458083-5458134)
chr7 (4-51)||(32315222-32315269)
chr7 (4-51)||(38911298-38911345)
chr7 (1-56)||(48007559-48007614)
chr7 (1-51)||(35165532-35165582)
chr7 (4-57)||(3584197-3584250)
chr7 (1-50)||(6384851-6384900)
chr7 (1-50)||(37864425-37864474)
chr7 (4-52)||(429193-429241)
chr7 (1-57)||(5041332-5041388)
chr7 (4-52)||(8879762-8879810)
chr7 (6-50)||(10029842-10029886)
chr7 (11-51)||(41860280-41860320)
chr7 (4-44)||(45425459-45425499)
chr7 (11-51)||(47195574-47195614)
chr7 (3-51)||(48527189-48527237)
[»] chr2 (10 HSPs)
chr2 (1-50)||(16204829-16204878)
chr2 (4-52)||(40967386-40967434)
chr2 (8-51)||(10076873-10076916)
chr2 (4-51)||(37320532-37320579)
chr2 (1-44)||(42200693-42200736)
chr2 (1-50)||(24520651-24520700)
chr2 (5-57)||(5676732-5676784)
chr2 (4-52)||(20990919-20990967)
chr2 (1-57)||(42475122-42475178)
chr2 (5-57)||(44694681-44694733)
[»] scaffold0238 (1 HSPs)
scaffold0238 (3-51)||(25388-25436)
[»] scaffold0126 (1 HSPs)
scaffold0126 (3-51)||(34902-34950)


Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 14574282 - 14574560
Alignment:
Q  1 cagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgacagagcttttatagacgtactaaactcatacaaaaaattctcatc 100  Q
    |||||||| |||||||||| ||||||| ||| ||||| ||||||||| | || ||| |||| |||||||||    |||||||||||||||||||||||||    
T  14574282 cagaccttacatatattatatattgtacttaccaactgagttaagcttatgaagactgagcgtttatagac----taaactcatacaaaaaattctcatc 14574377  T
Q  101 tttaaaataataaattgcacgttggaaaatattcagataaatgtattcatgaacacatcttccataatcaagtagccaaagactagcacatttagaaagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  14574378 tttaaaataataaattgcacgttggaaaatattcagataaatgtattcatgaacacatcttccataatcaagtagcccaagactagcacatttagaaagg 14574477  T
Q  201 acattggttagtataa-cccgtcaagctcaaaacatgaactcaacatttcgcagaacaaatcaagtgattcttgtggagattg 282  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  14574478 acattggttagtataaccccgtcaagctcaaaacatgaactcaatatttcccagaacaaatcaagtgattcttgtggagattg 14574560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 19783649 - 19783696
Alignment:
Q  3 gaccttgcatatattatgtattgtatttatcaactaagttaagctcac 50  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  19783649 gaccttgcatatattatgtattgtctttatcaactaagttaagctcac 19783696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 35109447 - 35109399
Alignment:
Q  3 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 51  Q
    |||||||||||||||||||||||| |||| ||||| |||||||||||||    
T  35109447 gaccttgcatatattatgtattgtctttaccaactgagttaagctcacg 35109399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 31159473 - 31159430
Alignment:
Q  6 cttgcatatattatgtattgtatttatcaactaagttaagctca 49  Q
    ||||||||||||||||||||| |||||||||| |||||||||||    
T  31159473 cttgcatatattatgtattgtctttatcaactgagttaagctca 31159430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 8545003 - 8545052
Alignment:
Q  3 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 52  Q
    |||||||||||||||||| |||||  ||||||||| ||||||||||||||    
T  8545003 gaccttgcatatattatgcattgtccttatcaactgagttaagctcacga 8545052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 12285617 - 12285665
Alignment:
Q  4 accttgcatatattatgtattgtatttatcaactaagttaagctcacga 52  Q
    |||||||||||||||| |||||| |||||||||| ||||||| ||||||    
T  12285617 accttgcatatattatatattgtctttatcaactgagttaagttcacga 12285665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 16485977 - 16486025
Alignment:
Q  3 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 51  Q
    |||||||||||||||||||||||| |||| | ||| |||||||||||||    
T  16485977 gaccttgcatatattatgtattgtctttaccgacttagttaagctcacg 16486025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 40446032 - 40445976
Alignment:
Q  1 cagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 57  Q
    |||||||||||||||||||| |||||  ||||||||| |||||| ||||||| ||||    
T  40446032 cagaccttgcatatattatgcattgtccttatcaactgagttaaactcacgaggaca 40445976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 1476125 - 1476171
Alignment:
Q  4 accttgcatatattatgtattgtatttatcaactaagttaagctcac 50  Q
    ||||||||||||||||| ||| | |||| ||||||||||||||||||    
T  1476125 accttgcatatattatgaattatttttaccaactaagttaagctcac 1476171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 6898070 - 6898020
Alignment:
Q  1 cagaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 51  Q
    ||||| |||||||||||||| ||| | |||| |||||||||||||||||||    
T  6898070 cagactttgcatatattatgcattatctttaccaactaagttaagctcacg 6898020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 21212067 - 21212117
Alignment:
Q  3 gaccttgcatata-ttatgtattgtatttatcaactaagttaagctcacga 52  Q
    ||||||||||||| |||||||||||   |||||||||||||||||||||||    
T  21212067 gaccttgcatataattatgtattgtccatatcaactaagttaagctcacga 21212117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 25607070 - 25607108
Alignment:
Q  1 cagaccttgcatatattatgtattgtatttatcaactaa 39  Q
    |||||||||||||||||||| ||||| ||||||||||||    
T  25607070 cagaccttgcatatattatgcattgtctttatcaactaa 25607108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 32460058 - 32460016
Alignment:
Q  3 gaccttgcatatattatgtattgtatttatcaactaagttaag 45  Q
    ||||||| |||||||||||||||| |||||||||| |||||||    
T  32460058 gaccttgtatatattatgtattgtctttatcaactgagttaag 32460016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 36623187 - 36623237
Alignment:
Q  2 agaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 52  Q
    ||||||||||||||||||| ||| |  ||||||||| ||||||||||||||    
T  36623187 agaccttgcatatattatgcattattcttatcaactgagttaagctcacga 36623237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 5001601 - 5001556
Alignment:
Q  4 accttgcatatattatgtattgtatttatcaactaagttaagctca 49  Q
    |||||||||||||||||||||||  ||||||||  |||||||||||    
T  5001601 accttgcatatattatgtattgtccttatcaaccgagttaagctca 5001556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 13864391 - 13864342
Alignment:
Q  3 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 52  Q
    ||||||||||||||||||||||||   || ||||| ||||||||||||||    
T  13864391 gaccttgcatatattatgtattgttcataccaactgagttaagctcacga 13864342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 22498991 - 22498942
Alignment:
Q  1 cagaccttgcatatattatgtattgtatttatcaactaagttaagctcac 50  Q
    |||||||||||||||||||| |||||  ||| ||||| ||||||||||||    
T  22498991 cagaccttgcatatattatgcattgtccttaccaactgagttaagctcac 22498942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 30893979 - 30893926
Alignment:
Q  4 accttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 57  Q
    ||||||||||||||||| ||||| ||||  |||| |||||||||||||| ||||    
T  30893979 accttgcatatattatgcattgtctttacaaactgagttaagctcacgaggaca 30893926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 23118066 - 23118114
Alignment:
Q  4 accttgcatatattatgtattgtatttatcaactaagttaagctcacga 52  Q
    ||||| ||||||||||| |||||  ||||||||| ||||||||||||||    
T  23118066 accttacatatattatgcattgtccttatcaactgagttaagctcacga 23118114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 140 - 277
Target Start/End: Complemental strand, 977512 - 977374
Alignment:
Q  140 aatgtattcatgaacacatcttccataatcaagtagccaaagactagcacatttagaaaggacattggttagtataa-cccgtcaagctcaaaacatgaa 238  Q
    ||||||||||||||| ||||||||||||||||| |||| ||||||||||||   ||| || ||| |||||||||||| ||||||| ||||||||| ||||    
T  977512 aatgtattcatgaacccatcttccataatcaagaagcccaagactagcacaagcagatagcacactggttagtataaccccgtcaggctcaaaacctgaa 977413  T
Q  239 ctcaacatttcgcagaacaaatcaagtgattcttgtgga 277  Q
    | |||||||||  ||||||||||||||||||||||||||    
T  977412 cccaacatttcatagaacaaatcaagtgattcttgtgga 977374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 19124634 - 19124684
Alignment:
Q  1 cagaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 51  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  19124634 cagaccttgcatatattatgtattgtctttatcaactgagttaagctcacg 19124684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 11269742 - 11269693
Alignment:
Q  2 agaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 51  Q
    |||||||||||||||||||||||||  ||| |||||||||||||||||||    
T  11269742 agaccttgcatatattatgtattgtccttaccaactaagttaagctcacg 11269693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 7371562 - 7371610
Alignment:
Q  3 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 51  Q
    ||||||||||||||||||||||||  ||||||||| |||||||||||||    
T  7371562 gaccttgcatatattatgtattgtccttatcaactgagttaagctcacg 7371610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 133
Target Start/End: Complemental strand, 978680 - 978621
Alignment:
Q  74 actaaactcataca-aaaaattctcatctttaaaataataaattgcacgttggaaaatatt 133  Q
    |||||| ||||||| |||||||||||||||||| |||||||| ||| ||||||||||||||    
T  978680 actaaattcatacataaaaattctcatctttaagataataaaatgc-cgttggaaaatatt 978621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 24837494 - 24837541
Alignment:
Q  10 catatattatgtattgtatttatcaactaagttaagctcacgacgaca 57  Q
    |||||||||||||||||   ||||||||||||||||||||||| ||||    
T  24837494 catatattatgtattgttcatatcaactaagttaagctcacgaggaca 24837541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 36203283 - 36203228
Alignment:
Q  3 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgacag 58  Q
    |||||||||||||||||| |||||  ||||||||| || ||||||||||| |||||    
T  36203283 gaccttgcatatattatgcattgtccttatcaactgagctaagctcacgaggacag 36203228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 40847085 - 40847128
Alignment:
Q  7 ttgcatatattatgtattgtatttatcaactaagttaagctcac 50  Q
    |||||||||||||||||||| | |||||||| ||||||||||||    
T  40847085 ttgcatatattatgtattgtctctatcaactgagttaagctcac 40847128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 18635579 - 18635529
Alignment:
Q  1 cagaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 51  Q
    ||||||||| |||||||||| |||||  ||||||||| |||||||||||||    
T  18635579 cagaccttgtatatattatgcattgtccttatcaactgagttaagctcacg 18635529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 29908103 - 29908049
Alignment:
Q  3 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 57  Q
    |||||||||||||||||| |||||  ||| ||||| |||||||||||||| ||||    
T  29908103 gaccttgcatatattatgcattgtccttaccaactgagttaagctcacgaagaca 29908049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 38375006 - 38374956
Alignment:
Q  1 cagaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 51  Q
    |||||||||||||||||||| |||||   || |||||||||||||||||||    
T  38375006 cagaccttgcatatattatgcattgtccctaccaactaagttaagctcacg 38374956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 43183006 - 43183055
Alignment:
Q  2 agaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 51  Q
    ||||||||||||||||||| ||||| |||||||||| || || |||||||    
T  43183006 agaccttgcatatattatgcattgtctttatcaactgagatatgctcacg 43183055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 49041995 - 49042044
Alignment:
Q  3 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 52  Q
    |||||||||||||||||| ||||| | ||||||||| | |||||||||||    
T  49041995 gaccttgcatatattatgcattgtctatatcaactaggctaagctcacga 49042044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 7030907 - 7030963
Alignment:
Q  3 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgacaga 59  Q
    |||||||||||| ||||| ||||| | || ||||| |||||||||||||| ||||||    
T  7030907 gaccttgcatattttatgcattgtctataccaactgagttaagctcacgaggacaga 7030963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 11144677 - 11144713
Alignment:
Q  1 cagaccttgcatatattatgtattgtatttatcaact 37  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  11144677 cagaccttgcatatattatgcattgtctttatcaact 11144713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 41536968 - 41536920
Alignment:
Q  4 accttgcatatattatgtattgtatttatcaactaagttaagctcacga 52  Q
    |||||||||||||||||||||||  ||||||| | |||||| |||||||    
T  41536968 accttgcatatattatgtattgtccttatcaattgagttaaactcacga 41536920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 42316838 - 42316886
Alignment:
Q  3 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 51  Q
    |||||||||||||||||| | ||| |||| ||||| |||||||||||||    
T  42316838 gaccttgcatatattatgcactgtctttaccaactgagttaagctcacg 42316886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 53530056 - 53530008
Alignment:
Q  3 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 51  Q
    |||||| ||||||||||| ||||| ||||| |||| |||||||||||||    
T  53530056 gaccttacatatattatgcattgtttttattaactgagttaagctcacg 53530008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 7081667 - 7081717
Alignment:
Q  2 agaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 52  Q
    ||||||||||||||||||||||||| |||||||||| || |||||||||||    
T  7081667 agaccttgcatatattatgtattgtctttatcaactgagctaagctcacga 7081717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 12412326 - 12412270
Alignment:
Q  1 cagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 57  Q
    |||||||||||||||||||| ||||| | || |||||||||||||||||||| ||||    
T  12412326 cagaccttgcatatattatgcattgtctctaccaactaagttaagctcacgaggaca 12412270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 8810689 - 8810638
Alignment:
Q  1 cagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 52  Q
    |||||||||||||||||||||||||| |||| ||||| || |||||||||||    
T  8810689 cagaccttgcatatattatgtattgtctttaccaactgagctaagctcacga 8810638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 4450309 - 4450261
Alignment:
Q  3 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 51  Q
    |||||||||||||||||| ||||| |||||||||| || ||||||||||    
T  4450309 gaccttgcatatattatgcattgtctttatcaactgagctaagctcacg 4450261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 334189 - 334142
Alignment:
Q  1 cagaccttgcatatattatgtattgtatttatcaactaagttaagctc 48  Q
    |||||||||||||||||||| ||||| |||||||||| || |||||||    
T  334189 cagaccttgcatatattatgcattgtctttatcaactgagctaagctc 334142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 5040847 - 5040901
Alignment:
Q  3 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 57  Q
    ||||||||||||||||||| |||| |||| ||||| || ||||||||||| ||||    
T  5040847 gaccttgcatatattatgttttgtctttaccaactgagctaagctcacgatgaca 5040901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 18256930 - 18256872
Alignment:
Q  3 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgacagagc 61  Q
    |||||||||||||||||| |||||  ||||||||| || ||||||||||| ||| ||||    
T  18256930 gaccttgcatatattatgcattgtccttatcaactgagctaagctcacgaggactgagc 18256872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 404206 - 404161
Alignment:
Q  7 ttgcatatattatgtattgtatttatcaactaagttaagctcacga 52  Q
    |||||||||||||| |||||  ||| ||||||||||||||||||||    
T  404206 ttgcatatattatgcattgtccttaccaactaagttaagctcacga 404161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 6470637 - 6470678
Alignment:
Q  10 catatattatgtattgtatttatcaactaagttaagctcacg 51  Q
    ||||||||||| ||||| |||||||||| |||||||||||||    
T  6470637 catatattatgcattgtctttatcaactgagttaagctcacg 6470678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 13496163 - 13496114
Alignment:
Q  3 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 52  Q
    |||||||||||||||||| |||||   |||||||| ||||||||||||||    
T  13496163 gaccttgcatatattatgcattgttcatatcaactgagttaagctcacga 13496114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 15291705 - 15291758
Alignment:
Q  4 accttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 57  Q
    ||||||||||||||||  |||||  ||| |||||||||||||||||||| ||||    
T  15291705 accttgcatatattattcattgtccttaccaactaagttaagctcacgaggaca 15291758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 331901 - 331949
Alignment:
Q  4 accttgcatatattatgtattgtatttatcaactaagttaagctcacga 52  Q
    ||||||||||||||||| ||||| | || ||||| ||||||||||||||    
T  331901 accttgcatatattatgcattgtctctaccaactgagttaagctcacga 331949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 8381208 - 8381256
Alignment:
Q  3 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 51  Q
    |||||||||||| ||||| ||||| |||| ||||| |||||||||||||    
T  8381208 gaccttgcatatgttatgcattgtctttaccaactgagttaagctcacg 8381256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 29335587 - 29335643
Alignment:
Q  1 cagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 57  Q
    |||||||||||||||||||| ||||| | ||  |||| |||||||||||||| ||||    
T  29335587 cagaccttgcatatattatgcattgtttatactaactgagttaagctcacgaggaca 29335643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 29506874 - 29506825
Alignment:
Q  3 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 52  Q
    |||||||||||||||||||||||| | || ||||||||||||||||||||    
T  29506874 gaccttgcatatattatgtattgtctataccaactaagttaagctcacga 29506825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 34848525 - 34848476
Alignment:
Q  1 cagaccttgcatatattatgtattgtatttatcaactaagttaagctcac 50  Q
    |||||||||||||||||||| ||||| ||| ||||||||||||| |||||    
T  34848525 cagaccttgcatatattatgaattgtctttgtcaactaagttaaactcac 34848476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 26705649 - 26705598
Alignment:
Q  1 cagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 52  Q
    ||||||||||||||||||||||||||  ||| |||||||| |||| ||||||    
T  26705649 cagaccttgcatatattatgtattgttcttaccaactaagctaagttcacga 26705598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 44221036 - 44220985
Alignment:
Q  1 cagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 52  Q
    ||||||||| ||||||| || ||||| | |||||||||||||||||||||||    
T  44221036 cagaccttgtatatattgtgcattgtctctatcaactaagttaagctcacga 44220985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 17651392 - 17651442
Alignment:
Q  1 cagaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 51  Q
    |||||||||||||| |||||||||||   |||||||| |||||||||||||    
T  17651392 cagaccttgcatattttatgtattgtccatatcaacttagttaagctcacg 17651442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 23405372 - 23405418
Alignment:
Q  3 gaccttgcatatattatgtattgtatttatcaactaagttaagctca 49  Q
    |||||||||||||||||| |||||  ||| |||||||||||||||||    
T  23405372 gaccttgcatatattatgcattgtccttaacaactaagttaagctca 23405418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 30279638 - 30279688
Alignment:
Q  7 ttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 57  Q
    |||||||||||||||||||||  |||||||| || ||||||||||| ||||    
T  30279638 ttgcatatattatgtattgtacctatcaactgagctaagctcacgaggaca 30279688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 50
Target Start/End: Complemental strand, 43843937 - 43843891
Alignment:
Q  4 accttgcatatattatgtattgtatttatcaactaagttaagctcac 50  Q
    ||||||||||||||||| |||||  ||| ||||||||||||||||||    
T  43843937 accttgcatatattatgcattgtccttaccaactaagttaagctcac 43843891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 563248 - 563199
Alignment:
Q  3 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 52  Q
    ||||||||||||||||||| ||||  ||||||||| || |||||||||||    
T  563248 gaccttgcatatattatgttttgtccttatcaactgagctaagctcacga 563199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 12214042 - 12213993
Alignment:
Q  1 cagaccttgcatatattatgtattgtatttatcaactaagttaagctcac 50  Q
    ||||||||||||||||||||||||||   |||||||| || |||||||||    
T  12214042 cagaccttgcatatattatgtattgttcctatcaactgagctaagctcac 12213993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 28039872 - 28039921
Alignment:
Q  1 cagaccttgcatatattatgtattgtatttatcaactaagttaagctcac 50  Q
    |||||||||||||||||||| |||||  ||| ||||| ||||||||||||    
T  28039872 cagaccttgcatatattatgcattgtccttaccaactgagttaagctcac 28039921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 30548106 - 30548151
Alignment:
Q  4 accttgcatatattatgtattgtatttatcaactaagttaagctca 49  Q
    ||||||||||||||||| |||||  ||| |||||||||||||||||    
T  30548106 accttgcatatattatgcattgtccttaccaactaagttaagctca 30548151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 47835732 - 47835777
Alignment:
Q  6 cttgcatatattatgtattgtatttatcaactaagttaagctcacg 51  Q
    |||| |||||||||||||||| |||||||||| |||||| ||||||    
T  47835732 cttgtatatattatgtattgtttttatcaactgagttaaactcacg 47835777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 49875613 - 49875662
Alignment:
Q  3 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 52  Q
    |||||||||||||||||| |||||  ||| ||||| ||||||||||||||    
T  49875613 gaccttgcatatattatgcattgtccttaccaactgagttaagctcacga 49875662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 57
Target Start/End: Complemental strand, 1761506 - 1761454
Alignment:
Q  6 cttgcatatattatgtatt-gtatttatcaactaagttaagctcacgacgaca 57  Q
    ||||||||||||||| ||| || |||||||||||||||||||| |||| ||||    
T  1761506 cttgcatatattatgaatttgtctttatcaactaagttaagcttacgaggaca 1761454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 10654461 - 10654509
Alignment:
Q  3 gaccttgcatatattatgtattgt-atttatcaactaagttaagctcac 50  Q
    |||||||||||||||||| |||||  |||||||||| ||||||||||||    
T  10654461 gaccttgcatatattatgcattgtcttttatcaactgagttaagctcac 10654509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 16033462 - 16033518
Alignment:
Q  1 cagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 57  Q
    |||||||||||||||||||| |||||   |||||||| ||| |||||||||| ||||    
T  16033462 cagaccttgcatatattatgcattgtccctatcaactgagtcaagctcacgaggaca 16033518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 16967209 - 16967257
Alignment:
Q  4 accttgcatatattatgtattgtatttatcaactaagttaagctcacga 52  Q
    ||||||||||||||||| |||||   ||||||||||| |||||||||||    
T  16967209 accttgcatatattatgcattgtccatatcaactaagctaagctcacga 16967257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 19620623 - 19620575
Alignment:
Q  3 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 51  Q
    ||||||||||||||||||||||||  ||| ||||| || ||||||||||    
T  19620623 gaccttgcatatattatgtattgtccttaccaactgagctaagctcacg 19620575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 24978290 - 24978242
Alignment:
Q  4 accttgcatatattatgtattgtatttatcaactaagttaagctcacga 52  Q
    ||||||||||||||||||||| | | || ||||| ||||||||||||||    
T  24978290 accttgcatatattatgtattatctataccaactgagttaagctcacga 24978242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 31401667 - 31401715
Alignment:
Q  3 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 51  Q
    |||||||||||||||||| ||||| ||| |||||| |||||| ||||||    
T  31401667 gaccttgcatatattatgcattgtttttgtcaactgagttaaactcacg 31401715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 32950775 - 32950823
Alignment:
Q  3 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 51  Q
    |||||||||||||||||| ||||| | || ||||| |||||||||||||    
T  32950775 gaccttgcatatattatgcattgtttataccaactgagttaagctcacg 32950823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 47071972 - 47072020
Alignment:
Q  3 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 51  Q
    ||||||||||||||||||||||||  ||| ||| | |||||||||||||    
T  47071972 gaccttgcatatattatgtattgttcttaccaattgagttaagctcacg 47072020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 49183220 - 49183164
Alignment:
Q  3 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgacaga 59  Q
    ||||||||||||||||||||||||  ||| ||||| || ||| ||||||| ||||||    
T  49183220 gaccttgcatatattatgtattgtccttaccaactgagctaaactcacgaggacaga 49183164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 52267813 - 52267757
Alignment:
Q  1 cagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 57  Q
    |||||||||||||| ||||| |||||  ||| ||||| |||||||||||||| ||||    
T  52267813 cagaccttgcatattttatgcattgtccttaccaactgagttaagctcacgaggaca 52267757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 17062354 - 17062402
Alignment:
Q  4 accttgcatatattatgtattgtatttatcaactaagttaagctcacga 52  Q
    ||||||||||||||||||||||| | |||||||| ||||||||||||||    
T  17062354 accttgcatatattatgtattgtctatatcaactgagttaagctcacga 17062402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 17586004 - 17585956
Alignment:
Q  4 accttgcatatattatgtattgtatttatcaactaagttaagctcacga 52  Q
    ||||||||||||||||||||||| | |||||||| ||||||||||||||    
T  17586004 accttgcatatattatgtattgtctatatcaactgagttaagctcacga 17585956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 1877676 - 1877725
Alignment:
Q  3 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 52  Q
    |||||||||||||||||| ||||| | |||||||| ||||||||||||||    
T  1877676 gaccttgcatatattatgcattgtctatatcaactgagttaagctcacga 1877725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 6248348 - 6248301
Alignment:
Q  3 gaccttgcatatattatgtattgtatttatcaactaagttaagctcac 50  Q
    ||||||||||||||||||||| |||| |||||||| |||||| |||||    
T  6248348 gaccttgcatatattatgtatcgtatatatcaactgagttaaactcac 6248301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 36392837 - 36392883
Alignment:
Q  4 accttgcatatattatgtattgtatttatcaactaagttaagctcac 50  Q
    |||||||||||| ||| |||||| |||||||||| ||||||||||||    
T  36392837 accttgcatatactatctattgtctttatcaactgagttaagctcac 36392883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 11771754 - 11771705
Alignment:
Q  3 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 52  Q
    |||||||||||||||||||||||| | |||||||| || |||||| ||||    
T  11771754 gaccttgcatatattatgtattgtctctatcaactgagctaagcttacga 11771705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 29924932 - 29924985
Alignment:
Q  4 accttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 57  Q
    ||||||||||||||||| |||||  ||| ||||||||||||| |||||| ||||    
T  29924932 accttgcatatattatgcattgttcttaacaactaagttaagttcacgaggaca 29924985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 30071531 - 30071580
Alignment:
Q  4 accttgcatatattatgtattgtatttatcaactaagttaagctcacgac 53  Q
    |||||| |||||||||| |||||  ||||||||||||||||| |||||||    
T  30071531 accttgtatatattatgcattgttcttatcaactaagttaagttcacgac 30071580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 27191807 - 27191751
Alignment:
Q  1 cagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 57  Q
    |||||||||||||||||||| |||||  ||| ||||| || ||||||||||| ||||    
T  27191807 cagaccttgcatatattatgaattgttcttaccaactgagctaagctcacgaggaca 27191751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 28084328 - 28084280
Alignment:
Q  4 accttgcatatattatgtattgtatttatcaactaagttaagctcacga 52  Q
    ||||||||||||||||  ||||| | |||||||| ||||||||||||||    
T  28084328 accttgcatatattattcattgtctctatcaactgagttaagctcacga 28084280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 39433459 - 39433403
Alignment:
Q  1 cagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 57  Q
    |||||||||||||| |||||||||||   |||||||| || ||||||||||| ||||    
T  39433459 cagaccttgcatattttatgtattgttcatatcaactgagctaagctcacgaggaca 39433403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 7824856 - 7824800
Alignment:
Q  1 cagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 57  Q
    |||||||||||||||||||||||||| | |||||||| |||||| ||||||| ||||    
T  7824856 cagaccttgcatatattatgtattgtctatatcaactgagttaaactcacgaggaca 7824800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 11574302 - 11574244
Alignment:
Q  1 cagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgacaga 59  Q
    ||||||||| |||||||||| ||| |  ||||||||| |||||||||||||| ||||||    
T  11574302 cagaccttgtatatattatgcattatccttatcaactgagttaagctcacgatgacaga 11574244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 1149082 - 1149139
Alignment:
Q  2 agaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgacaga 59  Q
    ||||||||||||||||||| |||||  ||| ||||| || ||||||||||| ||||||    
T  1149082 agaccttgcatatattatgcattgtccttaccaactgagctaagctcacgaggacaga 1149139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 23629813 - 23629760
Alignment:
Q  4 accttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 57  Q
    |||||||||||||||| ||||||   ||||||||||| ||||||||||| ||||    
T  23629813 accttgcatatattatatattgtccctatcaactaagataagctcacgatgaca 23629760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 43011368 - 43011315
Alignment:
Q  4 accttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 57  Q
    ||||||||| ||||||||||||| | |||||||| ||||| |||||||| ||||    
T  43011368 accttgcatgtattatgtattgtctatatcaactgagttaggctcacgaggaca 43011315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 44799073 - 44799118
Alignment:
Q  7 ttgcatatattatgtattgtatttatcaactaagttaagctcacga 52  Q
    |||||||| |||||||||||  ||||||| ||||||||||||||||    
T  44799073 ttgcatattttatgtattgttcttatcaaataagttaagctcacga 44799118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 5117254 - 5117206
Alignment:
Q  4 accttgcatatattatgtattgtatttatcaactaagttaagctcacga 52  Q
    ||||| |||||||||||||||||  ||||||||| || |||||||||||    
T  5117254 accttacatatattatgtattgtccttatcaactgagctaagctcacga 5117206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 29791822 - 29791774
Alignment:
Q  4 accttgcatatattatgtattgtatttatcaactaagttaagctcacga 52  Q
    ||||| ||||||||||||||||| | |||||||| |||||| |||||||    
T  29791822 accttacatatattatgtattgtttctatcaactgagttaaactcacga 29791774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 38573586 - 38573634
Alignment:
Q  2 agaccttgcatatattatgtattgtatttatcaactaagttaagctcac 50  Q
    |||||||| |||||||||| |||||  ||||||||| ||||||||||||    
T  38573586 agaccttgtatatattatgcattgttcttatcaactgagttaagctcac 38573634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0896 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 3190 - 3139
Alignment:
Q  1 cagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 52  Q
    |||||||||||||||||||||||||| |||| ||||| || |||||||||||    
T  3190 cagaccttgcatatattatgtattgtctttaccaactgagctaagctcacga 3139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 45979162 - 45979111
Alignment:
Q  1 cagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 52  Q
    |||||||||||||||||||||||||| |||||||| | |||||||| |||||    
T  45979162 cagaccttgcatatattatgtattgtctttatcaaatgagttaagcccacga 45979111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 7481274 - 7481226
Alignment:
Q  1 cagaccttgcatatattatgtattgtatttatcaactaagttaagctca 49  Q
    ||||||||||||| |||||||||||| |||| ||||| |||||||||||    
T  7481274 cagaccttgcatacattatgtattgtctttaccaactgagttaagctca 7481226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 5458083 - 5458134
Alignment:
Q  1 cagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 52  Q
    |||||||||||||||||||| |||||  ||||||||| || |||||||||||    
T  5458083 cagaccttgcatatattatgcattgttcttatcaactgagctaagctcacga 5458134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 32315269 - 32315222
Alignment:
Q  4 accttgcatatattatgtattgtatttatcaactaagttaagctcacg 51  Q
    ||||||||||||||||||| |||  ||||||||| |||||||||||||    
T  32315269 accttgcatatattatgtaatgtccttatcaactgagttaagctcacg 32315222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 38911345 - 38911298
Alignment:
Q  4 accttgcatatattatgtattgtatttatcaactaagttaagctcacg 51  Q
    ||||||||||||||||  ||||| |||||||||| |||||||||||||    
T  38911345 accttgcatatattatacattgtctttatcaactgagttaagctcacg 38911298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 48007559 - 48007614
Alignment:
Q  1 cagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgac 56  Q
    |||||||||||||||||||| |||||  ||| ||||| ||||||||||||| ||||    
T  48007559 cagaccttgcatatattatgcattgtcattaccaactgagttaagctcacggcgac 48007614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 35165582 - 35165532
Alignment:
Q  1 cagaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 51  Q
    |||||||| |||||||||||||||||  ||||||||| |||||| ||||||    
T  35165582 cagaccttacatatattatgtattgtcgttatcaactgagttaaactcacg 35165532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 3584250 - 3584197
Alignment:
Q  4 accttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 57  Q
    ||||||||||||||||| |||||  ||| |||||||||||||||| ||| ||||    
T  3584250 accttgcatatattatgcattgtccttaccaactaagttaagctcgcgaggaca 3584197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 6384900 - 6384851
Alignment:
Q  1 cagaccttgcatatattatgtattgtatttatcaactaagttaagctcac 50  Q
    |||||||||||||||||||| |||||  |||| |||| ||||||||||||    
T  6384900 cagaccttgcatatattatgcattgtccttattaactgagttaagctcac 6384851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 37864474 - 37864425
Alignment:
Q  1 cagaccttgcatatattatgtattgtatttatcaactaagttaagctcac 50  Q
    |||||||||||||||||||| |||||| ||| ||||| || |||||||||    
T  37864474 cagaccttgcatatattatgcattgtacttaccaactgagctaagctcac 37864425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 429193 - 429241
Alignment:
Q  4 accttgcatatattatgtattgtatttatcaactaagttaagctcacga 52  Q
    ||||||||||||||||||||| |   |||||||| ||||||||||||||    
T  429193 accttgcatatattatgtattatccatatcaactgagttaagctcacga 429241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 5041388 - 5041332
Alignment:
Q  1 cagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 57  Q
    |||||||||||||||||||| |||||   || ||||| |||||||||||||| ||||    
T  5041388 cagaccttgcatatattatgcattgtccataccaactcagttaagctcacgaggaca 5041332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 8879762 - 8879810
Alignment:
Q  4 accttgcatatattatgtattgtatttatcaactaagttaagctcacga 52  Q
    ||||||||||||||||| ||||| | || ||||| ||||||||||||||    
T  8879762 accttgcatatattatgcattgtctataccaactgagttaagctcacga 8879810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 10029842 - 10029886
Alignment:
Q  6 cttgcatatattatgtattgtatttatcaactaagttaagctcac 50  Q
    ||||||||||||||||||||| |||| ||| |||||||| |||||    
T  10029842 cttgcatatattatgtattgtctttaccaattaagttaaactcac 10029886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 41860280 - 41860320
Alignment:
Q  11 atatattatgtattgtatttatcaactaagttaagctcacg 51  Q
    |||||||||| ||||| |||||||| |||||||||||||||    
T  41860280 atatattatgcattgtctttatcaattaagttaagctcacg 41860320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 45425499 - 45425459
Alignment:
Q  4 accttgcatatattatgtattgtatttatcaactaagttaa 44  Q
    ||||||||||||||||| ||||| |||||||||| ||||||    
T  45425499 accttgcatatattatgcattgtctttatcaactgagttaa 45425459  T

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Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 47195574 - 47195614
Alignment:
Q  11 atatattatgtattgtatttatcaactaagttaagctcacg 51  Q
    |||||||||||||||||||||| |||  |||||||||||||    
T  47195574 atatattatgtattgtatttattaaccgagttaagctcacg 47195614  T

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Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 48527237 - 48527189
Alignment:
Q  3 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 51  Q
    |||||||||||||||||| |||||  ||||||||| || ||||||||||    
T  48527237 gaccttgcatatattatgcattgtccttatcaactgagataagctcacg 48527189  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 16204829 - 16204878
Alignment:
Q  1 cagaccttgcatatattatgtattgtatttatcaactaagttaagctcac 50  Q
    |||||||||||||||||||| |||||  ||||||||| ||||||||||||    
T  16204829 cagaccttgcatatattatgcattgtccttatcaactgagttaagctcac 16204878  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 40967386 - 40967434
Alignment:
Q  4 accttgcatatattatgtattgtatttatcaactaagttaagctcacga 52  Q
    ||||||||||||||||| |||||  ||||||||| ||||||||||||||    
T  40967386 accttgcatatattatgcattgtccttatcaactgagttaagctcacga 40967434  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 10076916 - 10076873
Alignment:
Q  8 tgcatatattatgtattgtatttatcaactaagttaagctcacg 51  Q
    ||||||||||||||||||| ||||||| |||||||||| |||||    
T  10076916 tgcatatattatgtattgtctttatcagctaagttaagttcacg 10076873  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 37320532 - 37320579
Alignment:
Q  4 accttgcatatattatgtattgtatttatcaactaagttaagctcacg 51  Q
    ||||||||||||||||| ||||| |||| ||||| |||||||||||||    
T  37320532 accttgcatatattatgcattgtctttaccaactgagttaagctcacg 37320579  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 42200736 - 42200693
Alignment:
Q  1 cagaccttgcatatattatgtattgtatttatcaactaagttaa 44  Q
    |||||||||||||||||||||||||| |||| ||||| ||||||    
T  42200736 cagaccttgcatatattatgtattgtctttaccaactgagttaa 42200693  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 24520651 - 24520700
Alignment:
Q  1 cagaccttgcatatattatgtattgtatttatcaactaagttaagctcac 50  Q
    |||||| ||||||||||||| ||||| |||| |||||||| |||||||||    
T  24520651 cagaccatgcatatattatgcattgtctttaccaactaagctaagctcac 24520700  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 5676784 - 5676732
Alignment:
Q  5 ccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 57  Q
    |||||||||||||||| |||||  ||| ||||| |||||||||||||| ||||    
T  5676784 ccttgcatatattatgcattgtcattaccaactgagttaagctcacgaggaca 5676732  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 20990919 - 20990967
Alignment:
Q  4 accttgcatatattatgtattgtatttatcaactaagttaagctcacga 52  Q
    ||||||||||| ||||| ||||| | || ||||||||||||||||||||    
T  20990919 accttgcatattttatgcattgtctataacaactaagttaagctcacga 20990967  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 42475122 - 42475178
Alignment:
Q  1 cagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 57  Q
    |||||||||||||| ||||| ||||| | || ||||| |||||||||||||| ||||    
T  42475122 cagaccttgcatattttatgcattgtttataccaactgagttaagctcacgaggaca 42475178  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 44694733 - 44694681
Alignment:
Q  5 ccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 57  Q
    |||||||||||||||| ||||| | |||||||| ||||||| |||||| ||||    
T  44694733 ccttgcatatattatgcattgtctatatcaactgagttaagttcacgaggaca 44694681  T

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Target: scaffold0238 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 25436 - 25388
Alignment:
Q  3 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 51  Q
    |||||||||||||||||| |||||  ||| ||||| |||||||||||||    
T  25436 gaccttgcatatattatgcattgtccttaccaactgagttaagctcacg 25388  T

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Target: scaffold0126 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 34902 - 34950
Alignment:
Q  3 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 51  Q
    |||||||||||||||||| |||||  ||| ||||| |||||||||||||    
T  34902 gaccttgcatatattatgcattgtccttaccaactgagttaagctcacg 34950  T

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