View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11090_high_45 (Length: 261)
Name: NF11090_high_45
Description: NF11090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11090_high_45 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 33399512 - 33399739
Alignment:
| Q |
17 |
gagaccaagttaactctgatgtctgcacgctagcagcccatggtgcatttgaaggcggtgctgcttcaggggccggcacaggtgagggtgagggggaggc |
116 |
Q |
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| T |
33399512 |
gagaccaagttaactctgatgtctgcacgctagcagcccatggtgcatttgaaggcggtgctgcttcaggggccggcacaggtgagggtgagggggaggc |
33399611 |
T |
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| Q |
117 |
tgaaggtgaggagggtgctggataccaaccatcttgttttggcaaaacatttatgaaaagcttttgtccattttcgcagtgattggcaacacctgaaatg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33399612 |
tgaaggtgaggagggtgctggataccaaccatcttgttttggtaaaacatttatgaaaagcttttgtccattttcgcagtgattggcaacacctgaaatg |
33399711 |
T |
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| Q |
217 |
taccatcttctcccaaaggttgtcaatg |
244 |
Q |
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||||||||||||||| |||||||||||| |
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| T |
33399712 |
taccatcttctcccataggttgtcaatg |
33399739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 17 - 243
Target Start/End: Original strand, 33395628 - 33395851
Alignment:
| Q |
17 |
gagaccaagttaactctgatgtctgcacgctagcagcccatggtgcatttgaaggcggtgctgcttcaggggccggcacaggtgagggtgagggggaggc |
116 |
Q |
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||||| |||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| | |||||||||||||||||| |||||||| |
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| T |
33395628 |
gagacgaagttatttctgatgtctgcacgctagcagcccatggcgcatttgaaggtggtgctgcttcaggagtcggcacaggtgagggtgacggggaggc |
33395727 |
T |
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| Q |
117 |
tgaaggtgaggagggtgctggataccaaccatcttgttttggcaaaacatttatgaaaagcttttgtccattttcgcagtgattggcaacacctgaaatg |
216 |
Q |
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| T |
33395728 |
tgaaggt---gagggtactggagaccaaccaaactgtggtggctgcacgtttatgaaaagcttttggccaagattgcagtgatgagcagcacctgaaatg |
33395824 |
T |
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| Q |
217 |
taccatcttctcccaaaggttgtcaat |
243 |
Q |
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| T |
33395825 |
taccatcttcttccataggttgtcaat |
33395851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 134 - 239
Target Start/End: Original strand, 33441945 - 33442050
Alignment:
| Q |
134 |
ctggataccaaccatcttgttttggcaaaacatttatgaaaagcttttgtccattttcgcagtgattggcaacacctgaaatgtaccatcttctcccaaa |
233 |
Q |
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||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||| | |
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| T |
33441945 |
ctggagaccaaccatcttgttttggctgcacagttatgaaaagcttttgtccattttcgcagtgatcggtaacacttgaaatgtaccatcttctcccata |
33442044 |
T |
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| Q |
234 |
ggttgt |
239 |
Q |
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|||||| |
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| T |
33442045 |
ggttgt |
33442050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 134 - 239
Target Start/End: Original strand, 33452165 - 33452270
Alignment:
| Q |
134 |
ctggataccaaccatcttgttttggcaaaacatttatgaaaagcttttgtccattttcgcagtgattggcaacacctgaaatgtaccatcttctcccaaa |
233 |
Q |
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||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||| | |
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| T |
33452165 |
ctggagaccaaccatcttgttttggctgcacagttatgaaaagcttttgtccattttcgcagtgatcggtaacacttgaaatgtaccatcttctcccata |
33452264 |
T |
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| Q |
234 |
ggttgt |
239 |
Q |
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|||||| |
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| T |
33452265 |
ggttgt |
33452270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 33395529 - 33395622
Alignment:
| Q |
17 |
gagaccaagttaactctgatgtctgcacgctagcagcccatggtgcatttgaaggcggtgctgcttcaggggccggcacaggtgagggtgaggg |
110 |
Q |
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| T |
33395529 |
gagaccaagttatctctgatgtctgcgcgccagcagcccatggtgcatttgaagacggtgctgcttcatgggccggtgtaggtgagggtgaggg |
33395622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 33399413 - 33399506
Alignment:
| Q |
17 |
gagaccaagttaactctgatgtctgcacgctagcagcccatggtgcatttgaaggcggtgctgcttcaggggccggcacaggtgagggtgaggg |
110 |
Q |
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|||||||| ||| |||||||| ||||||||||||| ||||||||||||||||||| ||||| ||||||||||| || ||||||||| ||||| |
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| T |
33399413 |
gagaccaatttatctctgatgcctgcacgctagcaacccatggtgcatttgaaggaggtgcggcttcaggggctggtgtaggtgagggcgaggg |
33399506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 105
Target Start/End: Original strand, 33399357 - 33399408
Alignment:
| Q |
54 |
ccatggtgcatttgaaggcggtgctgcttcaggggccggcacaggtgagggt |
105 |
Q |
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| T |
33399357 |
ccatggtgcatttgaaggtggtgctgcttgaggggccggtgtaggtgagggt |
33399408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 88
Target Start/End: Original strand, 33395473 - 33395507
Alignment:
| Q |
54 |
ccatggtgcatttgaaggcggtgctgcttcagggg |
88 |
Q |
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||||||||||||||||||||||||| ||||||||| |
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| T |
33395473 |
ccatggtgcatttgaaggcggtgctacttcagggg |
33395507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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