View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11090_high_48 (Length: 257)

Name: NF11090_high_48
Description: NF11090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11090_high_48
NF11090_high_48
[»] chr2 (3 HSPs)
chr2 (13-232)||(14735600-14735820)
chr2 (79-130)||(17303234-17303285)
chr2 (79-130)||(5887909-5887960)
[»] chr7 (3 HSPs)
chr7 (79-232)||(44629261-44629412)
chr7 (34-108)||(47520480-47520555)
chr7 (80-186)||(8061304-8061412)
[»] chr3 (1 HSPs)
chr3 (34-232)||(4221063-4221260)
[»] chr1 (1 HSPs)
chr1 (34-187)||(23825919-23826072)
[»] chr5 (1 HSPs)
chr5 (42-130)||(15974128-15974217)
[»] chr4 (3 HSPs)
chr4 (87-130)||(52797844-52797887)
chr4 (79-116)||(46852133-46852170)
chr4 (51-130)||(26494424-26494504)
[»] chr8 (1 HSPs)
chr8 (34-117)||(27084455-27084539)


Alignment Details
Target: chr2 (Bit Score: 157; Significance: 1e-83; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 13 - 232
Target Start/End: Complemental strand, 14735820 - 14735600
Alignment:
Q  13 gaagcaaaggagcattggtgaatctctttagggacagacaggggccatgacat-ccccaaatttttgttatatactatattaggtgtattatatcaatta 111  Q
    ||||||||||| || ||||| || ||||||||  ||||||||||||||| ||| ||||| |||||| |||||||||||||||||||||||||||||||||    
T  14735820 gaagcaaaggatcactggtggatttctttaggatcagacaggggccatggcattccccagatttttcttatatactatattaggtgtattatatcaatta 14735721  T
Q  112 gaatttggttgttgtagtgaaaatggagtactgtaagttgttaaaggttgttggttcaacacttacacatcttcttcttattacatttttaatcttctac 211  Q
    ||||||||||||||| ||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  14735720 gaatttggttgttgttgtggaaatggggtactgtaaattgttaaaggttgttggttcaacacttacacatcttcttcttattacatatttaatcttctac 14735621  T
Q  212 ttttacatattttattaaaaa 232  Q
    |||||||||||||||||||||    
T  14735620 ttttacatattttattaaaaa 14735600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 130
Target Start/End: Complemental strand, 17303285 - 17303234
Alignment:
Q  79 ttatatactatattaggtgtattatatcaattagaatttggttgttgtagtg 130  Q
    |||||||||||||||||||||| |||||||| | |||| |||||||||||||    
T  17303285 ttatatactatattaggtgtataatatcaataacaattcggttgttgtagtg 17303234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 130
Target Start/End: Original strand, 5887909 - 5887960
Alignment:
Q  79 ttatatactatattaggtgtattatatcaattagaatttggttgttgtagtg 130  Q
    |||||||||| ||||||||||| |||||||| | ||||||||||||| ||||    
T  5887909 ttatatactacattaggtgtataatatcaataataatttggttgttgcagtg 5887960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 79 - 232
Target Start/End: Original strand, 44629261 - 44629412
Alignment:
Q  79 ttatatactatattaggtgtattatatcaattagaatttggttgttgtagt-gaaaatggagtactgtaagttgttaaaggttgttggttcaacacttac 177  Q
    ||||||||||||||||||||||||||||||||| | || || ||||| ||| ||||  || || |||||| ||  ||||||| |  |||| ||||||| |    
T  44629261 ttatatactatattaggtgtattatatcaattaaatttcggctgttgcagtggaaaggggggtgctgtaatttactaaaggtcgccggttaaacacttcc 44629360  T
Q  178 acatcttcttcttattacatttttaatcttctacttttacatattttattaaaaa 232  Q
    |||   ||||||| |||||| |||||||||||||||||||||||| |||||||||    
T  44629361 aca---tcttctttttacatatttaatcttctacttttacatattgtattaaaaa 44629412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 34 - 108
Target Start/End: Complemental strand, 47520555 - 47520480
Alignment:
Q  34 atctctttagggacagacaggggccatgacatccccaaattttt-gttatatactatattaggtgtattatatcaa 108  Q
    ||||||| |||||||| | ||||||||||||||||| || |||| ||||||||||||||||| |||||||||||||    
T  47520555 atctcttcagggacaggctggggccatgacatcccccaagttttcgttatatactatattagatgtattatatcaa 47520480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 186
Target Start/End: Original strand, 8061304 - 8061412
Alignment:
Q  80 tatatactatattaggtgtattatatcaattagaatttggttgttgtagtgaaaatggagtactgtaagttgttaaaggttgt--tggttcaacacttac 177  Q
    |||||||||||||||||||||||||||||| ||| ||||| ||||| |||| |||  | ||||  ||| ||| ||||||||||   |||||||||||| |    
T  8061304 tatatactatattaggtgtattatatcaatcagattttggatgttgcagtggaaagagggtaccataaattgctaaaggttgtgcaggttcaacacttcc 8061403  T
Q  178 acatcttct 186  Q
    || ||||||    
T  8061404 acgtcttct 8061412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 34 - 232
Target Start/End: Original strand, 4221063 - 4221260
Alignment:
Q  34 atctctttagggacagacaggggccatgacatccccaaatttttg-ttatatactatattaggtgtattatatcaattagaatttggttgttgtagtgaa 132  Q
    |||||||||||||||| ||||||||||| ||||||| |  ||||  ||||||  | ||||||||||  || |||||||||| ||  | ||||| |||| |    
T  4221063 atctctttagggacaggcaggggccatggcatcccccaggttttccttatattttgtattaggtgtcataaatcaattagatttcagctgttgcagtgga 4221162  T
Q  133 aatggagtactgtaagttgttaaaggttgttggttcaacacttacacatcttcttcttattacatttttaatcttctacttttacatattttattaaaaa 232  Q
    ||||| ||   |||| ||| |||| |||| ||||||||||||| |||| | ||||||| || ||| |||| ||||||||||||||| ||| |||||||||    
T  4221163 aatggggtgtcgtaaattgctaaaagttgctggttcaacacttccaca-catcttctttttgcatattta-tcttctacttttacaaattgtattaaaaa 4221260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 187
Target Start/End: Original strand, 23825919 - 23826072
Alignment:
Q  34 atctctttagggacagacaggggccatgacatcc-ccaaatttttgttatatactatattaggtgtattatatcaattagaatttggttgttgtagtgaa 132  Q
    |||||||||||||||  ||||||||||| ||||| |||  ||||  |||||||||||||||||||||||||| |||||| | ||  |||||| ||||| |    
T  23825919 atctctttagggacaagcaggggccatgtcatcctccaggttttctttatatactatattaggtgtattataccaattatacttcagttgttatagtgga 23826018  T
Q  133 aatggagtactgtaagttgttaaaggttgttggttcaacacttacacatcttctt 187  Q
     |||  || |||||| | |||||| ||||| ||||||||| || | |||||||||    
T  23826019 catgaggtgctgtaaatcgttaaa-gttgtcggttcaacattttctcatcttctt 23826072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 130
Target Start/End: Complemental strand, 15974217 - 15974128
Alignment:
Q  42 agggacagacaggggccatgacatccccaa-atttttgttatatactatattaggtgtattatatcaattagaatttggttgttgtagtg 130  Q
    |||| ||| |||| |||||| ||||||| | |||||  |||||||||||||||||||||| || ||||| | ||||| ||||||||||||    
T  15974217 aggggcaggcaggtgccatggcatcccctagattttccttatatactatattaggtgtatgatttcaataacaatttagttgttgtagtg 15974128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 87 - 130
Target Start/End: Complemental strand, 52797887 - 52797844
Alignment:
Q  87 tatattaggtgtattatatcaattagaatttggttgttgtagtg 130  Q
    ||||||||||||| ||||||||| |||||| |||||||||||||    
T  52797887 tatattaggtgtaatatatcaataagaattcggttgttgtagtg 52797844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 116
Target Start/End: Complemental strand, 46852170 - 46852133
Alignment:
Q  79 ttatatactatattaggtgtattatatcaattagaatt 116  Q
    ||||||| |||||||||||||||||| |||||||||||    
T  46852170 ttatatattatattaggtgtattataacaattagaatt 46852133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 130
Target Start/End: Original strand, 26494424 - 26494504
Alignment:
Q  51 caggggccatgacatccccaa-atttttgttatatactatattaggtgtattatatcaattagaatttggttgttgtagtg 130  Q
    |||| |||||||||||||| | ||||   |||||||||||||||||||||| || ||||| | ||||| ||||||| ||||    
T  26494424 caggtgccatgacatcccccagatttcccttatatactatattaggtgtataatttcaataataatttagttgttgcagtg 26494504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 117
Target Start/End: Complemental strand, 27084539 - 27084455
Alignment:
Q  34 atctctttagggacagacaggggccatgacatcccc-aaatttttgttatatactatattaggtgtattatatcaattagaattt 117  Q
    |||||||| |||  || |||| |||||| ||||||| ||| |||  ||||||||||||||||||||||||| |||| ||| ||||    
T  27084539 atctctttgggggaaggcaggtgccatggcatcccccaaagtttccttatatactatattaggtgtattatttcaactaggattt 27084455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University