View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11090_high_53 (Length: 250)
Name: NF11090_high_53
Description: NF11090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11090_high_53 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 45567996 - 45568217
Alignment:
| Q |
18 |
ttaattaaccaattaagacacgaggnnnnnnnnnctgcatcttctcagcggtccatttgcttttcaaataatttcttattgattaaattaacactatcct |
117 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45567996 |
ttaattaaccaattaagacacgaggaaaaaaaaactgcatcttctcagcggtccatttgcttttcaaataatttcttattgattaaattaacactatcct |
45568095 |
T |
|
| Q |
118 |
ccaagactcaaatagggataatgaaaaattgtggcaagtatcggtgcaagcaattactctataaatgtacaaaaaacaaattaaaactaaattaagggta |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
45568096 |
ccaagactcaaatagggataatgaaaaattgtggcaagtatcggtgcaagcaattactctataaatgtacaaaaaactaattaaaactaaattaagggta |
45568195 |
T |
|
| Q |
218 |
tctaacaatcctctgtcttcat |
239 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
45568196 |
tctaacaatcctctgtcttcat |
45568217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 52 - 171
Target Start/End: Complemental strand, 35817250 - 35817131
Alignment:
| Q |
52 |
ctgcatcttctcagcggtccatttgcttttcaaataatttcttattgattaaattaacactatcctccaagactcaaatagggataatgaaaaattgtgg |
151 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
35817250 |
ctgcatcttcccagtggtccatttgcttttcaaataatttctcatcgattaaattaacactatcatccaagactcaaatagggataatgaaaaattgtgg |
35817151 |
T |
|
| Q |
152 |
caagtatcggtgcaagcaat |
171 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
35817150 |
caagtatcggtgcaagcaat |
35817131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 53 - 159
Target Start/End: Original strand, 45093113 - 45093218
Alignment:
| Q |
53 |
tgcatcttctcagcggtccatttgcttttcaaataatttcttattgattaaattaacactatcctccaagactcaaatagggataatgaaaaattgtggc |
152 |
Q |
| |
|
||||| |||||| |||||| ||||||||||||| |||||| | |||||| |||||| ||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
45093113 |
tgcattttctcaatggtccagttgcttttcaaattatttctcaatgattagattaac-ctatcatccaagactcaaatagggatagtgaaaaattgtggc |
45093211 |
T |
|
| Q |
153 |
aagtatc |
159 |
Q |
| |
|
||||||| |
|
|
| T |
45093212 |
aagtatc |
45093218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 191 - 232
Target Start/End: Complemental strand, 35816864 - 35816823
Alignment:
| Q |
191 |
aaacaaattaaaactaaattaagggtatctaacaatcctctg |
232 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35816864 |
aaactaattaaaactaaattaagggtatctaacaatcctctg |
35816823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 239
Target Start/End: Complemental strand, 45177357 - 45177309
Alignment:
| Q |
191 |
aaacaaattaaaactaaattaagggtatctaacaatcctctgtcttcat |
239 |
Q |
| |
|
|||| |||||||| ||||||||||| |||||||||||||||| |||||| |
|
|
| T |
45177357 |
aaactaattaaaagtaaattaagggcatctaacaatcctctgccttcat |
45177309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 229
Target Start/End: Original strand, 45093489 - 45093527
Alignment:
| Q |
191 |
aaacaaattaaaactaaattaagggtatctaacaatcct |
229 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
45093489 |
aaactaattaaaactaaatgaagggtatctaacaatcct |
45093527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University