View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11090_high_60 (Length: 239)
Name: NF11090_high_60
Description: NF11090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11090_high_60 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 54414392 - 54414172
Alignment:
| Q |
1 |
tttgaggcgtagaatctcttgcttcctttccttagcctaagaatcaaaacacgagattcaagttaaaaacgcattggatttttcagaagaaaagagagaa |
100 |
Q |
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| T |
54414392 |
tttgaggcgtagaatctcttgcttcctttccttagcctaagaatcaaaacacgagattcaagttaaaaacgcattggatttttcagaagaaaagagagaa |
54414293 |
T |
|
| Q |
101 |
gagtagtttcgatgaacctttcgtttccaacggagaagattttccgattgagaaggagaaatagcattggaggagtgtttagtgtttttgataaacttag |
200 |
Q |
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| T |
54414292 |
gagtagtttcgatgaacctttcgtttccaacggagaagattttccgattgagaaggagagatagcattggaggagtgtttagtgtttttgataaacttag |
54414193 |
T |
|
| Q |
201 |
aacggataagtgaaatcgcta |
221 |
Q |
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|||||| |||||||||||||| |
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| T |
54414192 |
aacggagaagtgaaatcgcta |
54414172 |
T |
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