View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11090_high_7 (Length: 509)

Name: NF11090_high_7
Description: NF11090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11090_high_7
NF11090_high_7
[»] chr1 (4 HSPs)
chr1 (199-498)||(52243383-52243682)
chr1 (378-495)||(33677638-33677755)
chr1 (193-322)||(24598855-24598983)
chr1 (19-58)||(52243807-52243846)
[»] chr4 (7 HSPs)
chr4 (204-488)||(53146837-53147114)
chr4 (316-488)||(48825306-48825477)
chr4 (344-463)||(55416901-55417020)
chr4 (343-444)||(26698102-26698203)
chr4 (381-496)||(31160930-31161047)
chr4 (193-247)||(48825251-48825305)
chr4 (365-432)||(48988969-48989036)
[»] chr5 (3 HSPs)
chr5 (223-459)||(35562479-35562716)
chr5 (316-498)||(27626109-27626286)
chr5 (380-432)||(36274880-36274932)
[»] chr2 (3 HSPs)
chr2 (329-488)||(9145585-9145744)
chr2 (343-444)||(26159642-26159743)
chr2 (397-444)||(27001281-27001328)
[»] chr8 (3 HSPs)
chr8 (343-488)||(13318027-13318172)
chr8 (383-444)||(30541914-30541975)
chr8 (372-416)||(36019029-36019073)
[»] chr6 (2 HSPs)
chr6 (354-496)||(12250876-12251018)
chr6 (397-444)||(34703322-34703369)
[»] chr3 (2 HSPs)
chr3 (197-465)||(21393735-21393997)
chr3 (372-444)||(3452247-3452319)
[»] chr7 (2 HSPs)
chr7 (378-466)||(34257588-34257676)
chr7 (383-440)||(6561153-6561210)


Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 199 - 498
Target Start/End: Complemental strand, 52243682 - 52243383
Alignment:
Q  199 gaaatttagtctctcaagtacaagaggtgccagagaaaagctaagaaaagtatacgttacatcaggttaccaacaagaaattaaacattatagccacaaa 298  Q
    |||| |||||||||||| ||||||||||| ||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  52243682 gaaacttagtctctcaaatacaagaggtgtcagagaagagctaagaaaagtatatgttacatcagcttaccaacaagaaattaaacattatagccacaaa 52243583  T
Q  299 ggagcacgctaaaacacacaaaaaagagagtgaaactaattatgaactcccagacataaaagggaattaagttaccatgtgtggtaattaaatgtaaaat 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52243582 ggagcacgctaaaacacacaaaaaagagagtgaaactaattatgaactcccagacataaaagggaattaagttaccatgtgtggtaattaaatgtaaaat 52243483  T
Q  399 taggatgatttgccttcagccactagaaggattggagcttaattttgtccacaagctgattaatagaaagccccttttgttggaaaactccagcattcat 498  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  52243482 taggatgatttgccttcagccaccagaaggattggagcttaattttgtccacaagctgattaatagaaagccccttttgttggaaaactctagcattcat 52243383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 378 - 495
Target Start/End: Complemental strand, 33677755 - 33677638
Alignment:
Q  378 tgtggtaattaaatgtaaaattaggatgatttgccttcagccactagaaggattggagcttaattttgtccacaagctgattaatagaaagccccttttg 477  Q
    |||| |||||||| | ||||||| ||||||||| ||||| ||| ||||||||||||||||||||||| |||| ||||||| | || |||  |||||||||    
T  33677755 tgtgataattaaaagcaaaattaagatgatttgtcttcaaccattagaaggattggagcttaattttatccataagctgaatgattgaattccccttttg 33677656  T
Q  478 ttggaaaactccagcatt 495  Q
    ||| ||||||| ||||||    
T  33677655 ttgaaaaactctagcatt 33677638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 193 - 322
Target Start/End: Original strand, 24598855 - 24598983
Alignment:
Q  193 taaccagaaatttagtctctcaagtacaagaggtgccagagaaaagctaagaaaagtatacgttacatcaggttaccaacaagaaattaaacattatagc 292  Q
    |||||||||| ||||||||||||  |||||| |||  | |||| ||||||||| ||| |  ||||||| |||||||||| |||||||||| ||||| |||    
T  24598855 taaccagaaacttagtctctcaaacacaagatgtgaaaaagaagagctaagaagagtgtctgttacatgaggttaccaaaaagaaattaagcattacagc 24598954  T
Q  293 cacaaaggagcacgctaaaacacacaaaaa 322  Q
    ||||||   ||||||||||| |||||||||    
T  24598955 cacaaaaaggcacgctaaaa-acacaaaaa 24598983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 52243846 - 52243807
Alignment:
Q  19 agctagctcatgtaccgattccccaatatataccactact 58  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  52243846 agctagctcatgtacggattccccaatatataccactact 52243807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 1e-45; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 204 - 488
Target Start/End: Original strand, 53146837 - 53147114
Alignment:
Q  204 ttagtctctcaagtacaagaggtgccagagaaaagctaagaaaagtatacgttacatcaggttaccaacaagaaattaaacattatagccacaaaggag- 302  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||    || ||| |||||||  |||||||| |||  ||| | |||||||| ||     
T  53146837 ttagtctctcaagcacgagaggtgccagagaaaagctaagaaaagtat----tagatctggttacctgcaagaaat-aaatgttacaaccacaaagcaga 53146931  T
Q  303 cacgctaaaacacacaaaaaagagagtgaaactaattatgaactcccagacataaaagggaattaagttaccatgtgtggtaattaaatgtaaaattagg 402  Q
    |||||||||| |||||||||| | | ||||||||||| |||||||||| ||||||||| | ||||||  ||||  | ||||||||||| | ||||||| |    
T  53146932 cacgctaaaaaacacaaaaaa-atattgaaactaattttgaactcccaaacataaaagaggattaagccaccacatatggtaattaaaagcaaaattatg 53147030  T
Q  403 atgatttgccttcagccactagaaggattggagcttaattttgtccacaagctgattaatagaaagccccttttgttggaaaactc 488  Q
    |||||||||  |||  ||| ||||  |||| || ||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  53147031 atgatttgc--tcaatcaccagaaaaattgtagtttaattttgtccacatgctgattaatagaaagcccattttgttggaaaactc 53147114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 316 - 488
Target Start/End: Original strand, 48825306 - 48825477
Alignment:
Q  316 acaaaaaagagagtgaaactaattatgaactcccagacataaaagggaattaagttaccatgtgtggtaattaaatgtaaaattaggatgatttgccttc 415  Q
    |||||||| ||| |||||||||||||||||||||| ||||||||||| ||||||  || |  |||||||||||||   ||||||||||||||||||||||    
T  48825306 acaaaaaatagattgaaactaattatgaactcccaaacataaaaggggattaagccacgacatgtggtaattaaaaacaaaattaggatgatttgccttc 48825405  T
Q  416 agccactagaaggattggagcttaattttgtccacaagctgattaatagaaagccccttttgttggaaaactc 488  Q
    | |||| | || ||||| | ||||||||||| | ||||||||||||||||||||||||||| ||| |||||||    
T  48825406 aaccaccaaaaagattgtaccttaattttgt-ctcaagctgattaatagaaagccccttttattgaaaaactc 48825477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 344 - 463
Target Start/End: Complemental strand, 55417020 - 55416901
Alignment:
Q  344 actcccagacataaaagggaattaagttaccatgtgtggtaattaaatgtaaaattaggatgatttgccttcagccactagaaggattggagcttaattt 443  Q
    ||||||| ||| | ||| ||||||||  ||||||||||||||||||| | ||||||||||||||||||||||| |||| ||||| |||| ||||||||||    
T  55417020 actcccaaacaaacaagagaattaagccaccatgtgtggtaattaaaagcaaaattaggatgatttgccttcaaccaccagaagaattgtagcttaattt 55416921  T
Q  444 tgtccacaagctgattaata 463  Q
    | || | |||||||| ||||    
T  55416920 tatctataagctgatgaata 55416901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 343 - 444
Target Start/End: Complemental strand, 26698203 - 26698102
Alignment:
Q  343 aactcccagacataaaagggaattaagttaccatgtgtggtaattaaatgtaaaattaggatgatttgccttcagccactagaaggattggagcttaatt 442  Q
    |||||||| ||||||||| | ||||||  ||||  |||| |||||||| | ||||||||||||||||| ||||| |||| |||||||||| |||||||||    
T  26698203 aactcccaaacataaaagaggattaagccaccacatgtgataattaaaagcaaaattaggatgatttggcttcaaccaccagaaggattgaagcttaatt 26698104  T
Q  443 tt 444  Q
    ||    
T  26698103 tt 26698102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 381 - 496
Target Start/End: Original strand, 31160930 - 31161047
Alignment:
Q  381 ggtaattaaatgtaaaattaggatgatttgc--cttcagccactagaaggattggagcttaattttgtccacaagctgattaatagaaagccccttttgt 478  Q
    |||||||||| | |||||||||||||||| |  ||||| |||| | |||| ||||||||||||||| || | ||| ||||| ||||||  ||||||||||    
T  31160930 ggtaattaaaagcaaaattaggatgatttacaccttcaaccaccataagggttggagcttaattttatctataagttgattgatagaattccccttttgt 31161029  T
Q  479 tggaaaactccagcattc 496  Q
    || ||||||| |||||||    
T  31161030 tgaaaaactctagcattc 31161047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 193 - 247
Target Start/End: Original strand, 48825251 - 48825305
Alignment:
Q  193 taaccagaaatttagtctctcaagtacaagaggtgccagagaaaagctaagaaaa 247  Q
    |||||||||| ||||||||||||| |||||||||| ||||||| |||||||||||    
T  48825251 taaccagaaacttagtctctcaagcacaagaggtgtcagagaagagctaagaaaa 48825305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 432
Target Start/End: Complemental strand, 48989036 - 48988969
Alignment:
Q  365 ttaagttaccatgtgtggtaattaaatgtaaaattaggatgatttgccttcagccactagaaggattg 432  Q
    |||||| ||||||| ||||||| ||| | ||||||||||||||| ||||||| |||| |||| |||||    
T  48989036 ttaagtcaccatgtatggtaatgaaaagcaaaattaggatgattggccttcaaccaccagaatgattg 48988969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 6e-32; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 223 - 459
Target Start/End: Original strand, 35562479 - 35562716
Alignment:
Q  223 aggtgccagagaaaagctaagaaaagtatacgtta-catcaggttaccaacaagaaattaaacattatagccacaaagga-gcacgctaaaacacacaaa 320  Q
    ||||| ||||||| || ||| ||||||||| |||| ||||| ||||||||||||||||||  | ||||||||||| |  | ||||| || || |||||||    
T  35562479 aggtgtcagagaagagttaaaaaaagtatatgttaacatcacgttaccaacaagaaattacgcgttatagccacataacatgcacggtataaaacacaaa 35562578  T
Q  321 aaagagagtgaaactaattatgaactcccagacataaaagggaattaagttaccatgtgtggtaattaaatgtaaaattaggatgatttgccttcagcca 420  Q
    ||| |   ||||||||||||||||||| || ||||||||||| ||||| | || |   |||||||||||| | |||||||||||||||| | |||||||     
T  35562579 aaataatttgaaactaattatgaactctcaaacataaaaggggattaaatcactacacgtggtaattaaaagcaaaattaggatgattttctttcagcc- 35562677  T
Q  421 ctagaaggattggagcttaattttgtccacaagctgatt 459  Q
    |  ||||||||| |||||||||||||||||||| |||||    
T  35562678 ccggaaggattgtagcttaattttgtccacaagttgatt 35562716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 316 - 498
Target Start/End: Original strand, 27626109 - 27626286
Alignment:
Q  316 acaaaaaagagagtgaaactaattatgaactcccagacataaaagggaattaagttaccatgtgtggtaattaaatgtaaaattaggatgatttgccttc 415  Q
    |||||||||||| |||| ||||||||||||||||| ||||||||||  |||||| |||||  | || |||||||| | |||||||| |||||||| |||     
T  27626109 acaaaaaagagactgaacctaattatgaactcccaaacataaaaggagattaagctaccacatatgctaattaaaagcaaaattagaatgatttgtctt- 27626207  T
Q  416 agccactagaaggattggagcttaattttgtccacaagctgattaatagaaagccccttttgttggaaaactccagcattcat 498  Q
      |||  ||||  |||| ||||||| ||| || |||||||||||| ||||||  |  ||||||||||||| || |||||||||    
T  27626208 --ccatcagaaatattgtagcttaa-tttatctacaagctgattattagaaa-acatttttgttggaaaattctagcattcat 27626286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 380 - 432
Target Start/End: Original strand, 36274880 - 36274932
Alignment:
Q  380 tggtaattaaatgtaaaattaggatgatttgccttcagccactagaaggattg 432  Q
    ||||||||||| | |||| ||||||||| ||||||||| ||| ||||||||||    
T  36274880 tggtaattaaaagcaaaactaggatgatctgccttcagtcaccagaaggattg 36274932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 9e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 329 - 488
Target Start/End: Complemental strand, 9145744 - 9145585
Alignment:
Q  329 tgaaactaattatgaactcccagacataaaagggaattaagttaccatgtgtggtaattaaatgtaaaattaggatgatttgccttcagccactagaagg 428  Q
    ||||||||| ||  |||||||| ||||||||| | ||||||  ||||| |||| |||||||| | ||||||||| ||||||||||||| |||| | || |    
T  9145744 tgaaactaagtaacaactcccaaacataaaagaggattaagccaccatttgtgctaattaaaagcaaaattagggtgatttgccttcaaccaccaaaaag 9145645  T
Q  429 attggagcttaattttgtccacaagctgattaatagaaagccccttttgttggaaaactc 488  Q
    |||||||||||||||| || | ||||||||||||||||  |||| |||||||||| ||||    
T  9145644 attggagcttaattttatctagaagctgattaatagaattccccgtttgttggaagactc 9145585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 343 - 444
Target Start/End: Original strand, 26159642 - 26159743
Alignment:
Q  343 aactcccagacataaaagggaattaagttaccatgtgtggtaattaaatgtaaaattaggatgatttgccttcagccactagaaggattggagcttaatt 442  Q
    ||||| || ||||||||| | ||||||  ||||  |||| ||| |||| | ||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  26159642 aactctcaaacataaaagaggattaagccaccacatgtgataactaaaagcaaaattaggatgatttgtcttcagccactagaaggattgaagcttaatt 26159741  T
Q  443 tt 444  Q
    ||    
T  26159742 tt 26159743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 444
Target Start/End: Complemental strand, 27001328 - 27001281
Alignment:
Q  397 attaggatgatttgccttcagccactagaaggattggagcttaatttt 444  Q
    |||| ||||||||||||||| ||||||||||| ||| |||||||||||    
T  27001328 attatgatgatttgccttcaaccactagaaggtttgaagcttaatttt 27001281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 343 - 488
Target Start/End: Original strand, 13318027 - 13318172
Alignment:
Q  343 aactcccagacataaaagggaattaagttaccatgtgtggtaattaaatgtaaaattaggatgatttgccttcagccactagaaggattggagcttaatt 442  Q
    |||||||| ||| | ||| | ||||||  ||||||||||||||||||| | |||||||||||||||||||  ||||||| |||| |||||  ||||||||    
T  13318027 aactcccaaacacagaagaggattaagccaccatgtgtggtaattaaaagcaaaattaggatgatttgccaccagccaccagaatgattgttgcttaatt 13318126  T
Q  443 ttgtccacaagctgattaatagaaagccccttttgttggaaaactc 488  Q
    |||||   |||||||| |||||||   || ||||||||||| ||||    
T  13318127 ttgtctttaagctgatgaatagaatttccattttgttggaagactc 13318172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 383 - 444
Target Start/End: Complemental strand, 30541975 - 30541914
Alignment:
Q  383 taattaaatgtaaaattaggatgatttgccttcagccactagaaggattggagcttaatttt 444  Q
    |||||||| | |||||||||||||||||  |||| |||| ||||||||||||||||||||||    
T  30541975 taattaaaagcaaaattaggatgatttgttttcaaccacaagaaggattggagcttaatttt 30541914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 416
Target Start/End: Complemental strand, 36019073 - 36019029
Alignment:
Q  372 accatgtgtggtaattaaatgtaaaattaggatgatttgccttca 416  Q
    |||||||||| |||||||| | ||| |||||||||||||||||||    
T  36019073 accatgtgtgataattaaaagcaaagttaggatgatttgccttca 36019029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 354 - 496
Target Start/End: Complemental strand, 12251018 - 12250876
Alignment:
Q  354 ataaaagggaattaagttaccatgtgtggtaattaaatgtaaaattaggatgatttgccttcagccactagaaggattggagcttaattttgtccacaag 453  Q
    ||||||||| ||||||  ||||  |||| |||||||| | ||||||| |||||||||| |||| ||||||||||||||||||||||| ||| || | |||    
T  12251018 ataaaaggggattaagccaccacatgtgataattaaaagcaaaattatgatgatttgctttcaaccactagaaggattggagcttaactttatctaaaag 12250919  T
Q  454 ctgattaatagaaagccccttttgttggaaaactccagcattc 496  Q
     ||| | || |||  || ||||||||| ||||||| |||||||    
T  12250918 ttgaatgattgaattcctcttttgttgaaaaactctagcattc 12250876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 444
Target Start/End: Complemental strand, 34703369 - 34703322
Alignment:
Q  397 attaggatgatttgccttcagccactagaaggattggagcttaatttt 444  Q
    |||| ||||||||||||||| ||||||||||| ||| |||||||||||    
T  34703369 attatgatgatttgccttcaaccactagaaggtttgaagcttaatttt 34703322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 197 - 465
Target Start/End: Original strand, 21393735 - 21393997
Alignment:
Q  197 cagaaatttagtctctcaagtacaagaggtgccagagaaaagctaagaaaagtatacgttacatcaggttaccaacaagaaattaaacattatagccaca 296  Q
    |||||| ||||||||||||| | ||||||||||| |||| ||||||||| ||| |  ||||||| |||||||||| |||||| |||   ||| | |||||    
T  21393735 cagaaacttagtctctcaagcataagaggtgccaaagaagagctaagaagagtgtctgttacatgaggttaccaaaaagaaactaagtgttacaaccaca 21393834  T
Q  297 aaggagcacgctaaaacacacaaaaaagagagtgaaact-aattatgaactcccagacataaaagggaattaagttaccatgtgtggtaattaaatgtaa 395  Q
     || ||||||||||||    || |||||||| ||||| | ||  ||||||||||  ||||||||||| ||||||  ||||   ||| || |||||   ||    
T  21393835 gagaagcacgctaaaa---gcacaaaagagattgaaaataaaaaatgaactcccgaacataaaaggggattaagccaccacacgtgatagttaaa---aa 21393928  T
Q  396 aattaggatgatttgccttcagccactagaaggattggagcttaattttgtccacaagctgattaataga 465  Q
    ||  ||| ||||||||||||| |||| |||||||||| ||||||||||  || | ||| |||||||||||    
T  21393929 aaaaagg-tgatttgccttcaaccaccagaaggattgaagcttaatttcatctataagttgattaataga 21393997  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 372 - 444
Target Start/End: Original strand, 3452247 - 3452319
Alignment:
Q  372 accatgtgtggtaattaaatgtaaaattaggatgatttgccttcagccactagaaggattggagcttaatttt 444  Q
    |||||||||| ||||||||   |||||||||||| |||||||||| ||||||||||||||| |||||||||||    
T  3452247 accatgtgtgataattaaaaacaaaattaggatggtttgccttcaaccactagaaggattgtagcttaatttt 3452319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 378 - 466
Target Start/End: Complemental strand, 34257676 - 34257588
Alignment:
Q  378 tgtggtaattaaatgtaaaattaggatgatttgccttcagccactagaaggattggagcttaattttgtccacaagctgattaatagaa 466  Q
    |||| |||||||| ||||| ||||||||||||||||||  |||| |||| || || |||||||||||||| | ||| ||||||||||||    
T  34257676 tgtgataattaaaagtaaagttaggatgatttgccttcgaccaccagaacgactgaagcttaattttgtctataagttgattaatagaa 34257588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 383 - 440
Target Start/End: Original strand, 6561153 - 6561210
Alignment:
Q  383 taattaaatgtaaaattaggatgatttgccttcagccactagaaggattggagcttaa 440  Q
    |||||||| | |||||||  |||||||||||||| |||| ||||||||||||||||||    
T  6561153 taattaaaagaaaaattaaaatgatttgccttcaaccaccagaaggattggagcttaa 6561210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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