View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11090_low_10 (Length: 465)
Name: NF11090_low_10
Description: NF11090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11090_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 1 - 455
Target Start/End: Original strand, 3303104 - 3303558
Alignment:
| Q |
1 |
aggcctgctggcttctcctcctttttctgttgctatcaatgttgtcaaaatcaatatttacctagggttgagacttgagagtgggtgaatgataataata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3303104 |
aggcctgctggcttctcctcctttttctgttgctatcaatgttgtcaaaatcaatatttacctagggttgagacttgagagtgggtgaatgataataata |
3303203 |
T |
|
| Q |
101 |
ggattgtggcacagattctaagttccttcttaaaattcaaaatgttaccttaaacactcacgcacatgcctgatagaaaataagtaataacatagataag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3303204 |
ggattgtggcacagattctaagttccttcttaaaattcaaaatgttaccttaaacactcacgcacatgcctgatagaaaataagtaataacatagataag |
3303303 |
T |
|
| Q |
201 |
caaaatgacctctaaatcatattcacaaggtcacatacaactgatgatgagtaaatgagtcacataacataagtttttgacaacactgtcaatgagtcac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3303304 |
caaaatgacctctaaatcatattcacaaggtcacatacaactcatgatgagtaaatgagtcacataacataagtttttgacaacactgccaatgagtcac |
3303403 |
T |
|
| Q |
301 |
ataacacaagtttttgagaacactgaacacaatactaaaccacaaaaggaaatagtccagaacctctaactttagaatctagcctggctaatctttcaag |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3303404 |
ataacacaagtttttgagaacactgaacacaatactaaaccacaaaaggaaatagtccagaacctctaactttagaatctagcctggctaatctttcaag |
3303503 |
T |
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| Q |
401 |
tcatattccatatgatcttcatctcttcattatccatggcatttccaccttcatc |
455 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3303504 |
tcatattccatatgatcttcatctcttcattatccatggcatttccaccttcatc |
3303558 |
T |
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