View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11090_low_12 (Length: 443)
Name: NF11090_low_12
Description: NF11090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11090_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-153; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 9 - 311
Target Start/End: Original strand, 17135516 - 17135818
Alignment:
| Q |
9 |
agcagagatgaatgacacactattgacagcatatctttgttttccattgataattggagcagaattttgaagtctaattgtacgtgttgtgtttatcatt |
108 |
Q |
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| T |
17135516 |
agcagggataaatgacacactattgacagcatatctttgttttcctttgataattggagcagaattttgaagtctaattgtacgtgttgtgtttatcatt |
17135615 |
T |
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| Q |
109 |
ccataatggtaggatccttgtggatttggtcttggtccacttgctgtaagattcctcctgattcaattaatcatttgttaaagtcagcatgggacacgga |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
17135616 |
ccataatggtaggatccttgtggatttggtcttggtccacttgctgtaagattcctcctggttcaattaaccatttgttaaagtcagcatgggacacgga |
17135715 |
T |
|
| Q |
209 |
aacttgagatcgaaagtgtgtttggtgtccaacgattgtcagcattggacactgatatgtgcagtaatttatattcaagaactagtttgcttatatgtcc |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
17135716 |
aacttgagatcgaaagtgtgtttggtgtccaacgattgtcagcattggacaccgatatgtgcagtaatttatattcaagaactagtttgcttatatgtac |
17135815 |
T |
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| Q |
309 |
aac |
311 |
Q |
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||| |
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| T |
17135816 |
aac |
17135818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 19 - 202
Target Start/End: Complemental strand, 17348345 - 17348162
Alignment:
| Q |
19 |
aatgacacactattgacagcatatctttgttttccattgataattggagcagaattttgaagtctaattgtacgtgttgtgtttatcattccataatggt |
118 |
Q |
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| T |
17348345 |
aatgacacaccgttgacagcatatctttgttttccattgataattggagcagaattttgaagtctaattgtacgtgttgtgtttatcattccataatggt |
17348246 |
T |
|
| Q |
119 |
aggatccttgtggatttggtcttggtccacttgctgtaagattcctcctgattcaattaatcatttgttaaagtcagcatggga |
202 |
Q |
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| T |
17348245 |
aggatccttgtggatttggtcttggtccacttgctgtaagattcctcctggttcaattaaccatttgttaaagtcagcatggga |
17348162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 202 - 311
Target Start/End: Complemental strand, 17348101 - 17347998
Alignment:
| Q |
202 |
acacggaaacttgagatcgaaagtgtgtttggtgtccaacgattgtcagcattggacactgatatgtgcagtaatttatattcaagaactagtttgctta |
301 |
Q |
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| T |
17348101 |
acacggaaacttgagatcgaaagtgtgtttggtgtctaacga------gcgttggacaccgatgtgtgtagtaatttatattcaagaactagtttgctta |
17348008 |
T |
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| Q |
302 |
tatgtccaac |
311 |
Q |
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||||| |||| |
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| T |
17348007 |
tatgtacaac |
17347998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 325 - 400
Target Start/End: Original strand, 17135838 - 17135904
Alignment:
| Q |
325 |
gaaattgcgtacgttagatatgattaactaactgccttaactgccatgaattagtttgcttataattcatttcgga |
400 |
Q |
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| T |
17135838 |
gaaattgcgcacgttagatatgattaac---------taactgccatgaattagtttgcttataattcatttcgga |
17135904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 325 - 400
Target Start/End: Complemental strand, 17347978 - 17347912
Alignment:
| Q |
325 |
gaaattgcgtacgttagatatgattaactaactgccttaactgccatgaattagtttgcttataattcatttcgga |
400 |
Q |
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||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
17347978 |
gaaattgcgcacgttagatatgattaactaactgcc---------atgaattagtttgcttataattcatttcgga |
17347912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 98 - 161
Target Start/End: Original strand, 28939685 - 28939748
Alignment:
| Q |
98 |
tgtttatcattccataatggtaggatccttgtggatttggtcttggtccacttgctgtaagatt |
161 |
Q |
| |
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| T |
28939685 |
tgtttatcataccatagtggtatgatccttgtggattaggccttggtccacttgcagtaagatt |
28939748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 168
Target Start/End: Complemental strand, 55296567 - 55296502
Alignment:
| Q |
103 |
atcattccataatggtaggatccttgtggatttggtcttggtccacttgctgtaagattcctcctg |
168 |
Q |
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|||| |||||| || || |||||||| || ||||||||||||||||||||||| || |||| |||| |
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| T |
55296567 |
atcaatccatagtgataagatccttgagggtttggtcttggtccacttgctgtcaggttccacctg |
55296502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 168
Target Start/End: Complemental strand, 55712511 - 55712446
Alignment:
| Q |
103 |
atcattccataatggtaggatccttgtggatttggtcttggtccacttgctgtaagattcctcctg |
168 |
Q |
| |
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|||| |||||| ||||| |||| ||| || ||||||||||||||||||||||| || |||| |||| |
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| T |
55712511 |
atcaatccatagtggtaagatcattgagggtttggtcttggtccacttgctgtcaggttccacctg |
55712446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 10 - 169
Target Start/End: Original strand, 37090705 - 37090864
Alignment:
| Q |
10 |
gcagagatgaatgacacactattgacagcatatctttgttttccattgataattggagcagaattttgaagtctaattgtacgtgttgtgtttatcattc |
109 |
Q |
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| T |
37090705 |
gcagggatgaacgaaacactattaacagcatatctttgcttgccattgataactggtgcagagttttcaagtcttattgtacgcgtcgtgtttatcaaac |
37090804 |
T |
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| Q |
110 |
cataatggtaggatccttgtggatttggtcttggtccacttgctgtaagattcctcctga |
169 |
Q |
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| T |
37090805 |
cataatggtaagatccttgcggattaggtcttggtccactagccgtaagattcctcctga |
37090864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 93 - 158
Target Start/End: Original strand, 53749610 - 53749675
Alignment:
| Q |
93 |
tgttgtgtttatcattccataatggtaggatccttgtggatttggtcttggtccacttgctgtaag |
158 |
Q |
| |
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|||||||||||| | || |||||||||||||||||||| || || |||||||||||||||||||| |
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| T |
53749610 |
tgttgtgtttatgagaccgtaatggtaggatccttgtgggttaggccttggtccacttgctgtaag |
53749675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 99 - 152
Target Start/End: Original strand, 8571006 - 8571059
Alignment:
| Q |
99 |
gtttatcattccataatggtaggatccttgtggatttggtcttggtccacttgc |
152 |
Q |
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||||||||| || |||||||| |||||||| ||||||||||||||||||||||| |
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| T |
8571006 |
gtttatcatgccgtaatggtatgatccttgcggatttggtcttggtccacttgc |
8571059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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