View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11090_low_16 (Length: 420)
Name: NF11090_low_16
Description: NF11090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11090_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 194 - 406
Target Start/End: Original strand, 11819074 - 11819283
Alignment:
| Q |
194 |
ttgcaaataaaatggcacacatccaaacccagtattgtatttccatctttgaataatcgaatatatgatatatctatctagttcatttgcttattatatc |
293 |
Q |
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| T |
11819074 |
ttgcaaataaaatggcacacatccaaacccagtattgtatttccatctttgaataattgaatatatc---tatctatctagttcatttgcttattatatc |
11819170 |
T |
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| Q |
294 |
tagtcttggaagtgggacgttgaagagggacttcaataaatatatctagttgcatttatcttcccctagattttgtgtcagagttggtgaggatgggatg |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11819171 |
tagtcttggaagtgggacgttgaagagggacttcaataaatatatctagttgcatttatcttcccctagattttgtgtcagagttggtgaggatgggatg |
11819270 |
T |
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| Q |
394 |
gttcaacattgat |
406 |
Q |
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||||||||||||| |
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| T |
11819271 |
gttcaacattgat |
11819283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 202 - 406
Target Start/End: Original strand, 11805133 - 11805334
Alignment:
| Q |
202 |
aaaatggcacacatccaaacccagtattgtatttccatctttgaataatcgaatatatgatatatctatctagttcatttgcttattatatctagtcttg |
301 |
Q |
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||||||||||||||||||||||| |||| |||||||||||||||||||| | |||||| |||||| |||||||||||||||||||| ||| |
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| T |
11805133 |
aaaatggcacacatccaaacccaatattctatttccatctttgaataattggatatat-----------ctagtttatttgcttattatatctagttttg |
11805221 |
T |
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| Q |
302 |
gaagtgggacgttgaagagggacttcaataaatatatct--------agttgcatttatcttcccctagattttgtgtcagagttggtgaggatgggatg |
393 |
Q |
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| T |
11805222 |
gaagtgggtcgttgaagagggacttgaatatatctagttcatttgcgagttgcatttatctccccctagatcttgtgtcagagttggtgaggatgggatg |
11805321 |
T |
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| Q |
394 |
gttcaacattgat |
406 |
Q |
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||||| ||||||| |
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| T |
11805322 |
gttcaccattgat |
11805334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 291 - 348
Target Start/End: Original strand, 11827837 - 11827894
Alignment:
| Q |
291 |
atctagtcttggaagtgggacgttgaagagggacttcaataaatatatctagttgcat |
348 |
Q |
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| T |
11827837 |
atctagtcttggaagtgggacgttgaagagggacttcaataaatatatctagttgcat |
11827894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 55 - 117
Target Start/End: Original strand, 11804080 - 11804142
Alignment:
| Q |
55 |
atcatcaacctcctttcttctacgataggttgaaataatttggccagcttctcacgtgcctat |
117 |
Q |
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| T |
11804080 |
atcatcaacctcctttcttccacaataggttgaattaatttgaccagcttcttacgtgcctat |
11804142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 55 - 121
Target Start/End: Original strand, 11817919 - 11817985
Alignment:
| Q |
55 |
atcatcaacctcctttcttctacgataggttgaaataatttggccagcttctcacgtgcctattata |
121 |
Q |
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|||||| |||||||||||||||| || |||| || ||||||||| |||||||| ||||||||||||| |
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| T |
11817919 |
atcatcgacctcctttcttctacaattggtttaactaatttggcaagcttctcccgtgcctattata |
11817985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 248
Target Start/End: Original strand, 11820549 - 11820595
Alignment:
| Q |
202 |
aaaatggcacacatccaaacccagtattgtatttccatctttgaata |
248 |
Q |
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|||||||||||||||| |||||| ||||||| |||||||||||||| |
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| T |
11820549 |
aaaatggcacacatccgaacccaaaattgtatatccatctttgaata |
11820595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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