View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11090_low_18 (Length: 399)
Name: NF11090_low_18
Description: NF11090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11090_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 8 - 382
Target Start/End: Original strand, 43489685 - 43490059
Alignment:
| Q |
8 |
tgagaagaaaaatacgaggaaactgaagtattgccctgcatagaagaaacaaatgcagaagaagatgatgacaaagaagaagctggcgacgatgatgaag |
107 |
Q |
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| T |
43489685 |
tgagtagaaaaatacgaggaaactgaagtattgccctgcatagaagaaacaaatgcagaagaagatgatgacaaagaagaagctggcgacgatgatgaag |
43489784 |
T |
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| Q |
108 |
attgtagatgagaagccacagaagaagccctaatcacattatcatcataaatattccttggagcaggaatacccgaaaactgaaaacgatcataaaagtt |
207 |
Q |
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| T |
43489785 |
attgtagatgagaagccatagaagaagccctaatcacattatcatcataaacattccttgcaggaggaatacccgaaaactgaaaacgatcataaaagtt |
43489884 |
T |
|
| Q |
208 |
tgtcgaatgctgagaagagttaggaaaaggtctagtatgaacaacaggatcagtagaagttgtaatagaaacaatcgaactcggtgaattcgaaacgttc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43489885 |
tgtcgaatgctgagaagagttaggaaaaggtctagtatgaacaacaggatcagtagaagttgtaatagaaacaatcgaactcggtgaattcgaaacgttc |
43489984 |
T |
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| Q |
308 |
cattgagtagtagtagtagctggtggagggttacgaagtgtaacattttcagggaaattgagtttggctttgttg |
382 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43489985 |
cattgagtagtagtagtagctggtggagggttacgaagtgtaacattttcagggaaattgagtttggctttgttg |
43490059 |
T |
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