View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11090_low_2 (Length: 621)

Name: NF11090_low_2
Description: NF11090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11090_low_2
NF11090_low_2
[»] chr8 (3 HSPs)
chr8 (12-64)||(25357218-25357270)
chr8 (71-112)||(7094444-7094485)
chr8 (71-112)||(7098177-7098218)
[»] chr3 (1 HSPs)
chr3 (71-112)||(8377316-8377357)
[»] chr1 (4 HSPs)
chr1 (71-112)||(22362543-22362584)
chr1 (80-112)||(33885938-33885970)
chr1 (80-112)||(33958282-33958314)
chr1 (64-112)||(41314548-41314596)
[»] chr7 (1 HSPs)
chr7 (64-112)||(2186884-2186932)
[»] chr5 (2 HSPs)
chr5 (64-112)||(37627683-37627731)
chr5 (64-112)||(37806806-37806854)


Alignment Details
Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 25357218 - 25357270
Alignment:
Q  12 agagaacaaaagcaacgtgtttaaaaagatcggtgtaacctcctatttcttta 64  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  25357218 agagaacaaaagcaacgtgtttaaaaagatcggtgtaacctcctatttnttta 25357270  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 71 - 112
Target Start/End: Complemental strand, 7094485 - 7094444
Alignment:
Q  71 tgccactcatttaggaaggaagttagtgggagggttatttca 112  Q
    |||||||| |||||||||| ||||||||||||||||||||||    
T  7094485 tgccactcttttaggaagggagttagtgggagggttatttca 7094444  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 71 - 112
Target Start/End: Complemental strand, 7098218 - 7098177
Alignment:
Q  71 tgccactcatttaggaaggaagttagtgggagggttatttca 112  Q
    |||||||| |||||||||| ||||||||||||||||||||||    
T  7098218 tgccactcttttaggaagggagttagtgggagggttatttca 7098177  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 8377316 - 8377357
Alignment:
Q  71 tgccactcatttaggaaggaagttagtgggagggttatttca 112  Q
    |||||||| |||||||||| ||||||||||||||||||||||    
T  8377316 tgccactcttttaggaagggagttagtgggagggttatttca 8377357  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 22362543 - 22362584
Alignment:
Q  71 tgccactcatttaggaaggaagttagtgggagggttatttca 112  Q
    |||||||| |||||||||| ||||||||||||||||||||||    
T  22362543 tgccactcttttaggaagggagttagtgggagggttatttca 22362584  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 80 - 112
Target Start/End: Original strand, 33885938 - 33885970
Alignment:
Q  80 tttaggaaggaagttagtgggagggttatttca 112  Q
    |||||||||| ||||||||||||||||||||||    
T  33885938 tttaggaagggagttagtgggagggttatttca 33885970  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 80 - 112
Target Start/End: Complemental strand, 33958314 - 33958282
Alignment:
Q  80 tttaggaaggaagttagtgggagggttatttca 112  Q
    |||||||||| ||||||||||||||||||||||    
T  33958314 tttaggaagggagttagtgggagggttatttca 33958282  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 64 - 112
Target Start/End: Complemental strand, 41314596 - 41314548
Alignment:
Q  64 agtatattgccactcatttaggaaggaagttagtgggagggttatttca 112  Q
    |||||| |||||||||| |||||||  |||||||||||| |||||||||    
T  41314596 agtatagtgccactcatctaggaagagagttagtgggagagttatttca 41314548  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 64 - 112
Target Start/End: Original strand, 2186884 - 2186932
Alignment:
Q  64 agtatattgccactcatttaggaaggaagttagtgggagggttatttca 112  Q
    |||||| |||||||||| |||||||  |||||||||||| |||||||||    
T  2186884 agtatagtgccactcatctaggaagagagttagtgggagagttatttca 2186932  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 64 - 112
Target Start/End: Complemental strand, 37627731 - 37627683
Alignment:
Q  64 agtatattgccactcatttaggaaggaagttagtgggagggttatttca 112  Q
    |||||| |||||||||| |||||||  |||||||||||| |||||||||    
T  37627731 agtatagtgccactcatctaggaagagagttagtgggagagttatttca 37627683  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 64 - 112
Target Start/End: Complemental strand, 37806854 - 37806806
Alignment:
Q  64 agtatattgccactcatttaggaaggaagttagtgggagggttatttca 112  Q
    |||||| |||||||||| |||||||  |||||||||||| |||||||||    
T  37806854 agtatagtgccactcatctaggaagagagttagtgggagagttatttca 37806806  T

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