View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11090_low_22 (Length: 380)
Name: NF11090_low_22
Description: NF11090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11090_low_22 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 11749122 - 11749501
Alignment:
| Q |
1 |
tacttcaagaaagcgagcattcatttttctcgaatcacaaagcaatgcgcaaagcctttgtttgaactcatccggaataccatcaagggaaaccaatcca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11749122 |
tacttcaagaaagcgagcattcatttttcctgaatcgcaaagcaacgcacaaagcctttgtttgaactcatccggaataccatcaagggaaaccaatcca |
11749221 |
T |
|
| Q |
101 |
tcagcatggttagcaagggctttaaaagacaattcttccaatgaaggaacacaaaaccttctattcaccaaatcttctccattccttttcggaactcaaa |
200 |
Q |
| |
|
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
11749222 |
tcaacatgattagcaagggctttaaaagacaattcttccaatgaaggaacacaaaaccttctattcaccaaatcttctccattccttttcggaacccaaa |
11749321 |
T |
|
| Q |
201 |
taagggattcatcaacaaacccaattttcttggttttggcaattcgttcttgaatagctttgattgtttcggagaaaggagttggagaaccatcattaat |
300 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
11749322 |
taagggattcatcaacaaaccccattttcttggttttggcaattcgttcttgaatagctttgattgtttcggagaaaggagttggagaaccatcatcaat |
11749421 |
T |
|
| Q |
301 |
ttcatgcaaaacaccatcatcttcactgctatcatcatcatcatcaatttgttgaatgtgaatgaatgatgcatatctct |
380 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
11749422 |
ttcacgcaaaacaccatcatcttcactactatcataatcatcatcaatttgttgaatgggaatgaatgatgcatatctct |
11749501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 133; Significance: 5e-69; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 4 - 296
Target Start/End: Original strand, 52011316 - 52011608
Alignment:
| Q |
4 |
ttcaagaaagcgagcattcatttttctcgaatcacaaagcaatgcgcaaagcctttgtttgaactcatccggaataccatcaagggaaaccaatccatca |
103 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| | ||| |||| |||||||||||||| |||||||| || ||||||||| ||||||| ||||||| |
|
|
| T |
52011316 |
ttcaagaaagcgacaattcatttttctcgaatcacataccaacgcgctaagcctttgtttgagctcatccgaaacaccatcaagcgaaaccattccatca |
52011415 |
T |
|
| Q |
104 |
gcatggttagcaagggctttaaaagacaattcttccaatgaaggaacacaaaaccttctattcaccaaatcttctccattccttttcggaactcaaataa |
203 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||||| ||| |||||||| | ||||||| |||||||||||||||| || ||||||||||| ||||||| |
|
|
| T |
52011416 |
gcatggttagcaagaattttaagagacatttcttgcaacgaaggaaccctaaacctttccctcaccaaatcttctccgtttcttttcggaacccaaataa |
52011515 |
T |
|
| Q |
204 |
gggattcatcaacaaacccaattttcttggttttggcaattcgttcttgaatagctttgattgtttcggagaaaggagttggagaaccatcat |
296 |
Q |
| |
|
|||||| | ||||| ||| |||||||| |||| ||||||||||| |||||||||||||||| ||| |||||||| ||||||||| |||||| |
|
|
| T |
52011516 |
aggattccttaacaaccccttttttcttgcttttcgcaattcgttcctgaatagctttgattgcttcagagaaaggtgttggagaagcatcat |
52011608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 4 - 306
Target Start/End: Original strand, 52001451 - 52001753
Alignment:
| Q |
4 |
ttcaagaaagcgagcattcatttttctcgaatcacaaagcaatgcgcaaagcctttgtttgaactcatccggaataccatcaagggaaaccaatccatca |
103 |
Q |
| |
|
||||||| || |||||||||||||||| |||||||||||||| |||| |||||||||||| | |||| | || ||||||||| ||| | | ||||||| |
|
|
| T |
52001451 |
ttcaagagagtgagcattcatttttcttgaatcacaaagcaacgcgctaagcctttgttttagtgcatcagaaacaccatcaagcgaagcaagtccatca |
52001550 |
T |
|
| Q |
104 |
gcatggttagcaagggctttaaaagacaattcttccaatgaaggaacacaaaaccttctattcaccaaatcttctccattccttttcggaactcaaataa |
203 |
Q |
| |
|
|||| || ||||| ||||| ||||| |||| || |||||||||||| || |||| |||| |||||||| |||||| ||| | ||| ||| ||| |
|
|
| T |
52001551 |
acatgattggcaagaattttaagagacatttctagcagtgaaggaacacataatcttcccctcacaaaatcttcaccattcagttttgaaacccaagtaa |
52001650 |
T |
|
| Q |
204 |
gggattcatcaacaaacccaattttcttggttttggcaattcgttcttgaatagctttgattgtttcggagaaaggagttggagaaccatcattaatttc |
303 |
Q |
| |
|
|||||||||| |||||||| |||| ||| |||| | ||||||||||||||||||||||| || || |||||||||||||||||| |||||| || ||| |
|
|
| T |
52001651 |
gggattcatcgacaaacccccttttgttgcttttagtaattcgttcttgaatagctttgactgctttagagaaaggagttggagaatcatcatcaacttc |
52001750 |
T |
|
| Q |
304 |
atg |
306 |
Q |
| |
|
||| |
|
|
| T |
52001751 |
atg |
52001753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 129 - 306
Target Start/End: Complemental strand, 51988057 - 51987880
Alignment:
| Q |
129 |
acaattcttccaatgaaggaacacaaaaccttctattcaccaaatcttctccattccttttcggaactcaaataagggattcatcaacaaacccaatttt |
228 |
Q |
| |
|
||||||||| |||||||||||||| ||| ||||| || ||||||||||| |||| ||| | | |||||||| ||||||||||||| ||| |||| |
|
|
| T |
51988057 |
acaattcttgcaatgaaggaacactaaagcttctcttttccaaatcttcttcattgaattttgaatgccaaataagagattcatcaacaagccctttttt |
51987958 |
T |
|
| Q |
229 |
cttggttttggcaattcgttcttgaatagctttgattgtttcggagaaaggagttggagaaccatcattaatttcatg |
306 |
Q |
| |
|
| || ||||||| |||| ||||||||||||||| |||| || |||||||| |||||||||||||||| | ||||||| |
|
|
| T |
51987957 |
catgcttttggcgattctttcttgaatagctttaattgctttagagaaaggtgttggagaaccatcatcagtttcatg |
51987880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University