View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11090_low_24 (Length: 361)
Name: NF11090_low_24
Description: NF11090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11090_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 42535771 - 42536120
Alignment:
| Q |
1 |
agacttcaaaaacaacaattacataacaagtgatcagaacctgatcatttcttactgcagggatgactctgaagatcaatcgatggttaccaatgtgata |
100 |
Q |
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| T |
42535771 |
agacttcaaaaacaacaattacataacaagtgatcagaacctgatcatttcttactgcagggatgactctgaagatcaatcgatggttaccaatgtgata |
42535870 |
T |
|
| Q |
101 |
ggttccatcaatgtgagcaacatcttatcggggaaatgtgtggcgaaaattaatgctacaaaagctttggagtgcattgattcatctnnnnnnntgtcag |
200 |
Q |
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| T |
42535871 |
ggttccatcaatgtgagcaacatcttatcggggaaatgtgtggcgaaaattaatgctacaaaagctttggagtgcattgattcatctaaaaaaatgtcag |
42535970 |
T |
|
| Q |
201 |
ttacagaggctttggagggtataaccaccctctattataatgaagaccgccaggaacacgatttatacgggtaacagacatggtcatgttcatgtctggt |
300 |
Q |
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| T |
42535971 |
ttacagaggctttggagggtataaccaccctctattatgatgaagacc----ggaacgcgatttatacgggtaacagacatggtcatgttcatgtctggt |
42536066 |
T |
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| Q |
301 |
ccaactccaaccaactgatgataaaaaaggaataggttttattgtttcttctca |
354 |
Q |
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| T |
42536067 |
ccaactccaaccaactaatgataaaaaaggaataggttttattgtttcttctca |
42536120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 10 - 354
Target Start/End: Original strand, 42530064 - 42530418
Alignment:
| Q |
10 |
aaacaacaattacataacaagtgatcagaacctgatcatttcttactgcagggatgactctgaagatcaatcgatggttaccaatgtgataggttccatc |
109 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| | ||||||||||| |
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| T |
42530064 |
aaaccacaattacataacaagtgatcagaacctgatcatttcttactgcagggatgactctgaagatcaatcgaaggaaaccaatgcggtaggttccatc |
42530163 |
T |
|
| Q |
110 |
aatgtgagcaacatcttatcggggaaatgtgtggcgaaaattaatgctacaaaagctttggagtgcattgattcatctnnnnnnntgtcagtt------a |
203 |
Q |
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| T |
42530164 |
aatgtgagcagcatcttgtcggggaaatgtgtggcgaaaattaatgctgcaaaagctttggagtgcattgattcatctcaaataatgtcagttccagtcc |
42530263 |
T |
|
| Q |
204 |
cagaggctttggagggtataaccaccctcta--------ttataatgaagaccgccaggaacacgatttatacgggtaacagacatggtcatgttcatgt |
295 |
Q |
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||||||||||||||||||||||||||||||| |||| ||||||||| ||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
42530264 |
cagaggctttggagggtataaccaccctctattatgaatttatgatgaagacc----ggaacgcgatttatacgggtaacagacatggtcttgttcatgt |
42530359 |
T |
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| Q |
296 |
ctggtccaactccaaccaactgatgataaaaaaggaataggttttattgtttcttctca |
354 |
Q |
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| T |
42530360 |
ctggtccaactccaaccaactgatgataaaaaaggaataggttttattgtttcttctca |
42530418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 101 - 162
Target Start/End: Original strand, 27826012 - 27826073
Alignment:
| Q |
101 |
ggttccatcaatgtgagcaacatcttatcggggaaatgtgtggcgaaaattaatgctacaaa |
162 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||| |
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| T |
27826012 |
ggttccatcaatgtgagcaacatcttgacagggaaatgtgtggcgaaaattaatgctgcaaa |
27826073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 86
Target Start/End: Original strand, 27825787 - 27825863
Alignment:
| Q |
10 |
aaacaacaattacataacaagtgatcagaacctgatcatttcttactgcagggatgactctgaagatcaatcgatgg |
86 |
Q |
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|||||||| |||||||||||||||||| ||||||| || || ||||||| | ||| ||||||||||||| ||||| |
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| T |
27825787 |
aaacaacatatacataacaagtgatcaggacctgattatatcgtactgcaaagctgaatctgaagatcaatggatgg |
27825863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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