View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11090_low_25 (Length: 358)
Name: NF11090_low_25
Description: NF11090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11090_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 5 - 341
Target Start/End: Original strand, 1857629 - 1857969
Alignment:
| Q |
5 |
gatatgacagcttgaaagatcacgtactgataacattggatgatggcagatgattgttagaagacaaaatgcagttccatttcattactttaggagtttt |
104 |
Q |
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| T |
1857629 |
gatatgacagcttgaaagatcacgtactgataacattggatgatggcagatgattgttagaagacaaaatgcagttccatttcattactttaggagtttt |
1857728 |
T |
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| Q |
105 |
tgcatacaaatttcagtttata----attctaatgtaatttgttttatatattgtgttgtgtgcatgtaatccagtttttaatgannnnnnnaagtgtag |
200 |
Q |
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| T |
1857729 |
tgcatacaaatttcagtttatatataattctaatgtaatttgttttatatattgtgttgtgtgcatgtaatccagtttttaatgatttttttaagtgtag |
1857828 |
T |
|
| Q |
201 |
agactgagatggaagtgttctttaataataagaaatcacttaccaaattttaccgtaaaaatcacaattaacacataaatgatcattatcctgattcaat |
300 |
Q |
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| T |
1857829 |
agactgagatggaagtgttctttaataataagaaatcactgaccaaattttaccgtaaaaatcacaattaacacataaatgatcattattctgattcaat |
1857928 |
T |
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| Q |
301 |
acacaacctcccgtacaagattgatcattgggtgatagcac |
341 |
Q |
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| T |
1857929 |
acataacctcccgtacaagattgatcattgggtgatagcac |
1857969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 5 - 185
Target Start/End: Original strand, 1869227 - 1869408
Alignment:
| Q |
5 |
gatatgacagcttgaaagatcacgtactgataacattggatgatggcagatgattgttagaagacaaaatgcagtt-ccatttcattactttaggagttt |
103 |
Q |
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| T |
1869227 |
gatatgacagcttgaaagaccatgtactgatagcattggatgatggcagatgattgttataagacaaaatgcagtaaccatttcattattttaggagttt |
1869326 |
T |
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| Q |
104 |
ttgcatacaaatttcagtttataattctaatgtaatttgttttatatattgtgttgtgtgcatgtaatccagtttttaatga |
185 |
Q |
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| T |
1869327 |
ttgcatacaaatttcagtttataattctaatgtaatttgttttatataatgtgttgtgtgcatgtaatccagtttttaatga |
1869408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 5 - 228
Target Start/End: Original strand, 1843618 - 1843828
Alignment:
| Q |
5 |
gatatgacagcttgaaagatcacgtactgataacattggatgatggcagatgattgttagaagacaaaatgcagt-tccatttcattactttaggagttt |
103 |
Q |
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||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||| |
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| T |
1843618 |
gatatgacagcttgaaagaccatgtactgatagcattggatgatggcagatgattgttttaagacaaaatgcagtaaccatttcattattttaggagttt |
1843717 |
T |
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| Q |
104 |
ttgcatacaaatttcagtttataattctaatgtaatttgttttatatattgtgttgtgtgcatgtaatccagtttttaatgannnnnnnaagtgtagaga |
203 |
Q |
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| T |
1843718 |
ttgcatacaaatttcagtttataattttaatttaatttat-------------ttgtgtgcatgtaatccagtttttaatga-ttgtataagtgtagaga |
1843803 |
T |
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| Q |
204 |
ctgagatggaagtgttctttaataa |
228 |
Q |
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|||||||||||||||||| |||||| |
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| T |
1843804 |
ctgagatggaagtgttctataataa |
1843828 |
T |
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Back To:
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