View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11090_low_27 (Length: 345)

Name: NF11090_low_27
Description: NF11090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11090_low_27
NF11090_low_27
[»] chr8 (12 HSPs)
chr8 (17-290)||(20104366-20104639)
chr8 (146-231)||(36697742-36697827)
chr8 (308-345)||(4786700-4786737)
chr8 (308-345)||(5526602-5526639)
chr8 (308-345)||(19163424-19163461)
chr8 (308-345)||(28435410-28435447)
chr8 (308-345)||(29007517-29007554)
chr8 (308-345)||(38815801-38815838)
chr8 (308-345)||(38815908-38815945)
chr8 (308-345)||(40305010-40305047)
chr8 (308-345)||(40305117-40305154)
chr8 (308-345)||(45145600-45145637)
[»] chr2 (8 HSPs)
chr2 (308-345)||(44402082-44402119)
chr2 (308-345)||(6048067-6048104)
chr2 (308-345)||(7354768-7354805)
chr2 (308-345)||(18649619-18649656)
chr2 (308-345)||(21208890-21208927)
chr2 (308-345)||(22352548-22352585)
chr2 (308-345)||(33618302-33618339)
chr2 (309-345)||(6047918-6047954)
[»] chr1 (11 HSPs)
chr1 (173-228)||(25934782-25934837)
chr1 (308-345)||(9135623-9135660)
chr1 (308-345)||(11994858-11994895)
chr1 (308-345)||(15998316-15998353)
chr1 (308-345)||(22954877-22954914)
chr1 (308-345)||(31414861-31414898)
chr1 (308-345)||(31852058-31852095)
chr1 (308-345)||(34662403-34662440)
chr1 (308-345)||(39151722-39151759)
chr1 (308-345)||(41649637-41649674)
chr1 (308-345)||(44371217-44371254)
[»] scaffold0633 (1 HSPs)
scaffold0633 (308-345)||(5322-5359)
[»] scaffold0200 (1 HSPs)
scaffold0200 (308-345)||(22407-22444)
[»] scaffold0036 (1 HSPs)
scaffold0036 (308-345)||(36408-36445)
[»] chr7 (4 HSPs)
chr7 (308-345)||(2850974-2851011)
chr7 (308-345)||(10300926-10300963)
chr7 (308-345)||(27878840-27878877)
chr7 (308-345)||(27878908-27878945)
[»] chr6 (6 HSPs)
chr6 (308-345)||(383605-383642)
chr6 (308-345)||(14897045-14897082)
chr6 (308-345)||(24914338-24914375)
chr6 (308-345)||(26597270-26597307)
chr6 (308-345)||(28034013-28034050)
chr6 (308-345)||(28034120-28034157)
[»] chr5 (5 HSPs)
chr5 (308-345)||(5226017-5226054)
chr5 (308-345)||(6168677-6168714)
chr5 (308-345)||(8618395-8618432)
chr5 (308-345)||(16067178-16067215)
chr5 (308-345)||(25600575-25600612)
[»] chr4 (8 HSPs)
chr4 (308-345)||(2994719-2994756)
chr4 (308-345)||(39466702-39466739)
chr4 (308-345)||(39466808-39466845)
chr4 (308-345)||(45861003-45861040)
chr4 (308-345)||(45861110-45861147)
chr4 (308-345)||(47628386-47628423)
chr4 (308-345)||(54677348-54677385)
chr4 (308-345)||(54927210-54927247)
[»] chr3 (5 HSPs)
chr3 (308-345)||(13927500-13927537)
chr3 (308-345)||(16607459-16607496)
chr3 (308-345)||(42605992-42606029)
chr3 (308-345)||(44687898-44687935)
chr3 (308-345)||(48908658-48908695)


Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 17 - 290
Target Start/End: Complemental strand, 20104639 - 20104366
Alignment:
Q  17 aataacatggggatattgaggccaaatagatttcgataatggccaaatttattgttccaaattaacctaacaatttctgggagaataagcagcgttttgg 116  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20104639 aataacatggggatatggaggccaaatagatttcgataatggccaaatttattgttccaaattaacctaacaatttctgggagaataagcagcgttttgg 20104540  T
Q  117 agagaatgaggaagcagaggtgcgatacagaagaggaagaagaagcgttggaaacaaatcctgtgcaatttattttgtgtggtacttttaatctgcaccg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20104539 agagaatgaggaagcagaggtgcgatacagaagaggaagaagaagcgttggaaacaaatcctgtgcaatttattttgtgtggtacttttaatctgcaccg 20104440  T
Q  217 tacaatttgatctaacaactgaaatttattgctctcatcttctcataataaggagtcctctcatttgatatgtc 290  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  20104439 tacaatttgatctaacaactgatatttattgctctcatcctctcataataaggagtcctctcatttgatatgtc 20104366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 146 - 231
Target Start/End: Complemental strand, 36697827 - 36697742
Alignment:
Q  146 gaagaggaagaagaagcgttggaaacaaatcctgtgcaatttattttgtgtggtacttttaatctgcaccgtacaatttgatctaa 231  Q
    |||||||||| ||||||  |  ||| ||||||||||||||| ||||||||||| |||||||   ||||||||||||||||||||||    
T  36697827 gaagaggaaggagaagcagtataaataaatcctgtgcaattaattttgtgtggaacttttagcatgcaccgtacaatttgatctaa 36697742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 4786700 - 4786737
Alignment:
Q  308 ctccctccgtgtcgaaatataagcaaaattcacttttt 345  Q
    |||||||||| || ||||||||||||||||||||||||    
T  4786700 ctccctccgtttcaaaatataagcaaaattcacttttt 4786737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Complemental strand, 5526639 - 5526602
Alignment:
Q  308 ctccctccgtgtcgaaatataagcaaaattcacttttt 345  Q
    |||||||||| || ||||||||||||||||||||||||    
T  5526639 ctccctccgtttcaaaatataagcaaaattcacttttt 5526602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Complemental strand, 19163461 - 19163424
Alignment:
Q  308 ctccctccgtgtcgaaatataagcaaaattcacttttt 345  Q
    |||||||||| || ||||||||||||||||||||||||    
T  19163461 ctccctccgtttcaaaatataagcaaaattcacttttt 19163424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 28435410 - 28435447
Alignment:
Q  308 ctccctccgtgtcgaaatataagcaaaattcacttttt 345  Q
    ||||||||||||| |||||||||||||||||| |||||    
T  28435410 ctccctccgtgtcaaaatataagcaaaattcatttttt 28435447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Complemental strand, 29007554 - 29007517
Alignment:
Q  308 ctccctccgtgtcgaaatataagcaaaattcacttttt 345  Q
    |||||||||| || ||||||||||||||||||||||||    
T  29007554 ctccctccgtatcaaaatataagcaaaattcacttttt 29007517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 38815801 - 38815838
Alignment:
Q  308 ctccctccgtgtcgaaatataagcaaaattcacttttt 345  Q
    |||||||||| || ||||||||||||||||||||||||    
T  38815801 ctccctccgtttcaaaatataagcaaaattcacttttt 38815838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Complemental strand, 38815945 - 38815908
Alignment:
Q  308 ctccctccgtgtcgaaatataagcaaaattcacttttt 345  Q
    |||||||||| || ||||||||||||||||||||||||    
T  38815945 ctccctccgtttcaaaatataagcaaaattcacttttt 38815908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 40305010 - 40305047
Alignment:
Q  308 ctccctccgtgtcgaaatataagcaaaattcacttttt 345  Q
    |||||||||| || ||||||||||||||||||||||||    
T  40305010 ctccctccgtatcaaaatataagcaaaattcacttttt 40305047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Complemental strand, 40305154 - 40305117
Alignment:
Q  308 ctccctccgtgtcgaaatataagcaaaattcacttttt 345  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  40305154 ctccctccgtgtctaaataaaagcaaaattcacttttt 40305117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 45145600 - 45145637
Alignment:
Q  308 ctccctccgtgtcgaaatataagcaaaattcacttttt 345  Q
    |||||||||| || ||||||||||||||||||||||||    
T  45145600 ctccctccgtttcaaaatataagcaaaattcacttttt 45145637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 44402082 - 44402119
Alignment:
Q  308 ctccctccgtgtcgaaatataagcaaaattcacttttt 345  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  44402082 ctccctccgtgtcaaaatataagcaaaattcacttttt 44402119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Complemental strand, 6048104 - 6048067
Alignment:
Q  308 ctccctccgtgtcgaaatataagcaaaattcacttttt 345  Q
    |||||||||| || ||||||||||||||||||||||||    
T  6048104 ctccctccgtttcaaaatataagcaaaattcacttttt 6048067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 7354768 - 7354805
Alignment:
Q  308 ctccctccgtgtcgaaatataagcaaaattcacttttt 345  Q
    |||||||||| || ||||||||||||||||||||||||    
T  7354768 ctccctccgtttcaaaatataagcaaaattcacttttt 7354805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 18649619 - 18649656
Alignment:
Q  308 ctccctccgtgtcgaaatataagcaaaattcacttttt 345  Q
    |||||||||| || ||||||||||||||||||||||||    
T  18649619 ctccctccgtttcaaaatataagcaaaattcacttttt 18649656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 21208890 - 21208927
Alignment:
Q  308 ctccctccgtgtcgaaatataagcaaaattcacttttt 345  Q
    |||||||||| || ||||||||||||||||||||||||    
T  21208890 ctccctccgtttcaaaatataagcaaaattcacttttt 21208927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Complemental strand, 22352585 - 22352548
Alignment:
Q  308 ctccctccgtgtcgaaatataagcaaaattcacttttt 345  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  22352585 ctccctccgtgtcaaaatataaacaaaattcacttttt 22352548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Complemental strand, 33618339 - 33618302
Alignment:
Q  308 ctccctccgtgtcgaaatataagcaaaattcacttttt 345  Q
    |||||||||| || ||||||||||||||||||||||||    
T  33618339 ctccctccgtttcaaaatataagcaaaattcacttttt 33618302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 345
Target Start/End: Original strand, 6047918 - 6047954
Alignment:
Q  309 tccctccgtgtcgaaatataagcaaaattcacttttt 345  Q
    ||||||||| || ||||||||||||||||||||||||    
T  6047918 tccctccgtatcaaaatataagcaaaattcacttttt 6047954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 25934782 - 25934837
Alignment:
Q  173 aatcctgtgcaatttattttgtgtggtacttttaatctgcaccgtacaatttgatc 228  Q
    |||||||||||||| ||||| ||| | ||||||||||||| | |||||||||||||    
T  25934782 aatcctgtgcaattaattttatgttgaacttttaatctgcgctgtacaatttgatc 25934837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Complemental strand, 9135660 - 9135623
Alignment:
Q  308 ctccctccgtgtcgaaatataagcaaaattcacttttt 345  Q
    |||||||||| || ||||||||||||||||||||||||    
T  9135660 ctccctccgtatcaaaatataagcaaaattcacttttt 9135623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 11994858 - 11994895
Alignment:
Q  308 ctccctccgtgtcgaaatataagcaaaattcacttttt 345  Q
    |||||||||| || ||||||||||||||||||||||||    
T  11994858 ctccctccgtttcaaaatataagcaaaattcacttttt 11994895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Complemental strand, 15998353 - 15998316
Alignment:
Q  308 ctccctccgtgtcgaaatataagcaaaattcacttttt 345  Q
    |||||||||| || ||||||||||||||||||||||||    
T  15998353 ctccctccgtttcaaaatataagcaaaattcacttttt 15998316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Complemental strand, 22954914 - 22954877
Alignment:
Q  308 ctccctccgtgtcgaaatataagcaaaattcacttttt 345  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  22954914 ctccctccgtgttaaaatataagcaaaattcacttttt 22954877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Complemental strand, 31414898 - 31414861
Alignment:
Q  308 ctccctccgtgtcgaaatataagcaaaattcacttttt 345  Q
    |||||||||| || ||||||||||||||||||||||||    
T  31414898 ctccctccgtttcaaaatataagcaaaattcacttttt 31414861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 31852058 - 31852095
Alignment:
Q  308 ctccctccgtgtcgaaatataagcaaaattcacttttt 345  Q
    |||||||||| || ||||||||||||||||||||||||    
T  31852058 ctccctccgtctcaaaatataagcaaaattcacttttt 31852095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 34662403 - 34662440
Alignment:
Q  308 ctccctccgtgtcgaaatataagcaaaattcacttttt 345  Q
    |||||||||| || ||||||||||||||||||||||||    
T  34662403 ctccctccgtttcaaaatataagcaaaattcacttttt 34662440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 39151722 - 39151759
Alignment:
Q  308 ctccctccgtgtcgaaatataagcaaaattcacttttt 345  Q
    |||||||||| || ||||||||||||||||||||||||    
T  39151722 ctccctccgtttcaaaatataagcaaaattcacttttt 39151759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Complemental strand, 41649674 - 41649637
Alignment:
Q  308 ctccctccgtgtcgaaatataagcaaaattcacttttt 345  Q
    |||||||||| || ||||||||||||||||||||||||    
T  41649674 ctccctccgtctcaaaatataagcaaaattcacttttt 41649637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 44371217 - 44371254
Alignment:
Q  308 ctccctccgtgtcgaaatataagcaaaattcacttttt 345  Q
    |||||||||| || ||||||||||||||||||||||||    
T  44371217 ctccctccgtctcaaaatataagcaaaattcacttttt 44371254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0633 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 5322 - 5359
Alignment:
Q  308 ctccctccgtgtcgaaatataagcaaaattcacttttt 345  Q
    |||||||||| || ||||||||||||||||||||||||    
T  5322 ctccctccgtctcaaaatataagcaaaattcacttttt 5359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Complemental strand, 22444 - 22407
Alignment:
Q  308 ctccctccgtgtcgaaatataagcaaaattcacttttt 345  Q
    |||||||||| || ||||||||||||||||||||||||    
T  22444 ctccctccgtatcaaaatataagcaaaattcacttttt 22407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 36408 - 36445
Alignment:
Q  308 ctccctccgtgtcgaaatataagcaaaattcacttttt 345  Q
    |||||||||| || ||||||||||||||||||||||||    
T  36408 ctccctccgtttcaaaatataagcaaaattcacttttt 36445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 2850974 - 2851011
Alignment:
Q  308 ctccctccgtgtcgaaatataagcaaaattcacttttt 345  Q
    |||||||||| || ||||||||||||||||||||||||    
T  2850974 ctccctccgtttcaaaatataagcaaaattcacttttt 2851011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Complemental strand, 10300963 - 10300926
Alignment:
Q  308 ctccctccgtgtcgaaatataagcaaaattcacttttt 345  Q
    |||||||||| || ||||||||||||||||||||||||    
T  10300963 ctccctccgtttcaaaatataagcaaaattcacttttt 10300926  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 27878840 - 27878877
Alignment:
Q  308 ctccctccgtgtcgaaatataagcaaaattcacttttt 345  Q
    |||||||||| || ||||||||||||||||||||||||    
T  27878840 ctccctccgtatcaaaatataagcaaaattcacttttt 27878877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Complemental strand, 27878945 - 27878908
Alignment:
Q  308 ctccctccgtgtcgaaatataagcaaaattcacttttt 345  Q
    |||||||||| || ||||||||||||||||||||||||    
T  27878945 ctccctccgtatcaaaatataagcaaaattcacttttt 27878908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 383605 - 383642
Alignment:
Q  308 ctccctccgtgtcgaaatataagcaaaattcacttttt 345  Q
    |||||||||| || ||||||||||||||||||||||||    
T  383605 ctccctccgtttcaaaatataagcaaaattcacttttt 383642  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 14897045 - 14897082
Alignment:
Q  308 ctccctccgtgtcgaaatataagcaaaattcacttttt 345  Q
    |||||||||| || ||||||||||||||||||||||||    
T  14897045 ctccctccgtatcaaaatataagcaaaattcacttttt 14897082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 24914338 - 24914375
Alignment:
Q  308 ctccctccgtgtcgaaatataagcaaaattcacttttt 345  Q
    |||||||||| || ||||||||||||||||||||||||    
T  24914338 ctccctccgtttcaaaatataagcaaaattcacttttt 24914375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Complemental strand, 26597307 - 26597270
Alignment:
Q  308 ctccctccgtgtcgaaatataagcaaaattcacttttt 345  Q
    |||||||||| || ||||||||||||||||||||||||    
T  26597307 ctccctccgtttcaaaatataagcaaaattcacttttt 26597270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 28034013 - 28034050
Alignment:
Q  308 ctccctccgtgtcgaaatataagcaaaattcacttttt 345  Q
    |||||||||| || ||||||||||||||||||||||||    
T  28034013 ctccctccgtatcaaaatataagcaaaattcacttttt 28034050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Complemental strand, 28034157 - 28034120
Alignment:
Q  308 ctccctccgtgtcgaaatataagcaaaattcacttttt 345  Q
    ||||||||||||| |||||||||||||| |||||||||    
T  28034157 ctccctccgtgtcaaaatataagcaaaaatcacttttt 28034120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 5226017 - 5226054
Alignment:
Q  308 ctccctccgtgtcgaaatataagcaaaattcacttttt 345  Q
    |||||||||| || ||||||||||||||||||||||||    
T  5226017 ctccctccgtttcaaaatataagcaaaattcacttttt 5226054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 6168677 - 6168714
Alignment:
Q  308 ctccctccgtgtcgaaatataagcaaaattcacttttt 345  Q
    |||||||||| || ||||||||||||||||||||||||    
T  6168677 ctccctccgtttcaaaatataagcaaaattcacttttt 6168714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 8618395 - 8618432
Alignment:
Q  308 ctccctccgtgtcgaaatataagcaaaattcacttttt 345  Q
    |||||||||| || ||||||||||||||||||||||||    
T  8618395 ctccctccgtttcaaaatataagcaaaattcacttttt 8618432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Complemental strand, 16067215 - 16067178
Alignment:
Q  308 ctccctccgtgtcgaaatataagcaaaattcacttttt 345  Q
    |||||||||| || ||||||||||||||||||||||||    
T  16067215 ctccctccgtttcaaaatataagcaaaattcacttttt 16067178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 25600575 - 25600612
Alignment:
Q  308 ctccctccgtgtcgaaatataagcaaaattcacttttt 345  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  25600575 ctccctccgtgtcaaaatataaacaaaattcacttttt 25600612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 2994719 - 2994756
Alignment:
Q  308 ctccctccgtgtcgaaatataagcaaaattcacttttt 345  Q
    |||||||||| || ||||||||||||||||||||||||    
T  2994719 ctccctccgtttcaaaatataagcaaaattcacttttt 2994756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 39466702 - 39466739
Alignment:
Q  308 ctccctccgtgtcgaaatataagcaaaattcacttttt 345  Q
    |||||||||| || ||||||||||||||||||||||||    
T  39466702 ctccctccgtatcaaaatataagcaaaattcacttttt 39466739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Complemental strand, 39466845 - 39466808
Alignment:
Q  308 ctccctccgtgtcgaaatataagcaaaattcacttttt 345  Q
    ||||||||||||| |||||||||||||| |||||||||    
T  39466845 ctccctccgtgtcaaaatataagcaaaaatcacttttt 39466808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 45861003 - 45861040
Alignment:
Q  308 ctccctccgtgtcgaaatataagcaaaattcacttttt 345  Q
    |||||||||| || ||||||||||||||||||||||||    
T  45861003 ctccctccgtttcaaaatataagcaaaattcacttttt 45861040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Complemental strand, 45861147 - 45861110
Alignment:
Q  308 ctccctccgtgtcgaaatataagcaaaattcacttttt 345  Q
    |||||||||| || ||||||||||||||||||||||||    
T  45861147 ctccctccgtttcaaaatataagcaaaattcacttttt 45861110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Complemental strand, 47628423 - 47628386
Alignment:
Q  308 ctccctccgtgtcgaaatataagcaaaattcacttttt 345  Q
    |||||||||| || ||||||||||||||||||||||||    
T  47628423 ctccctccgtttcaaaatataagcaaaattcacttttt 47628386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 54677348 - 54677385
Alignment:
Q  308 ctccctccgtgtcgaaatataagcaaaattcacttttt 345  Q
    |||||||||| || ||||||||||||||||||||||||    
T  54677348 ctccctccgtttcaaaatataagcaaaattcacttttt 54677385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Complemental strand, 54927247 - 54927210
Alignment:
Q  308 ctccctccgtgtcgaaatataagcaaaattcacttttt 345  Q
    |||||||||| || ||||||||||||||||||||||||    
T  54927247 ctccctccgtttcaaaatataagcaaaattcacttttt 54927210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Complemental strand, 13927537 - 13927500
Alignment:
Q  308 ctccctccgtgtcgaaatataagcaaaattcacttttt 345  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  13927537 ctccctccgtgtcaaaatataaacaaaattcacttttt 13927500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Complemental strand, 16607496 - 16607459
Alignment:
Q  308 ctccctccgtgtcgaaatataagcaaaattcacttttt 345  Q
    |||||||||| || ||||||||||||||||||||||||    
T  16607496 ctccctccgtatcaaaatataagcaaaattcacttttt 16607459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 42605992 - 42606029
Alignment:
Q  308 ctccctccgtgtcgaaatataagcaaaattcacttttt 345  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  42605992 ctccctccgtttcgaaatataagcaaaattcacatttt 42606029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 44687898 - 44687935
Alignment:
Q  308 ctccctccgtgtcgaaatataagcaaaattcacttttt 345  Q
    |||||||||| || ||||||||||||||||||||||||    
T  44687898 ctccctccgtttctaaatataagcaaaattcacttttt 44687935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 48908658 - 48908695
Alignment:
Q  308 ctccctccgtgtcgaaatataagcaaaattcacttttt 345  Q
    |||||||||| || ||||||||||||||||||||||||    
T  48908658 ctccctccgtttcaaaatataagcaaaattcacttttt 48908695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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