View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11090_low_3 (Length: 591)
Name: NF11090_low_3
Description: NF11090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11090_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 18 - 581
Target Start/End: Complemental strand, 26218430 - 26217852
Alignment:
| Q |
18 |
cacatacaatgaatttattactccttatacttcgccatacatcacagtagtttccaatctgtttggcaatatggcattactgaaagtggatatgcactta |
117 |
Q |
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| T |
26218430 |
cacatacaatgaatttattactccttatacttcgccatacatcacagtagtttccaatctgtttggcaatatggcattactgaaagtggatatgcactta |
26218331 |
T |
|
| Q |
118 |
aatccgaaaccacattcattcttgtgtgtatctaaactatcccaagatctatttgacctcac----------------caaaataaattcatcatttttg |
201 |
Q |
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| T |
26218330 |
aatccgaaaccacattcattcttgtgtgtatctaaactatcccaagatctatttgacctcacatctatttgacctcaccaaaataaattcatcatttttg |
26218231 |
T |
|
| Q |
202 |
tcaattttgacacaaagattagttggtagtaataatatgctcaacacattggacgagatcgaatgcaggacatatttaattaagatttctctacctactt |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26218230 |
tcaattttgacacaaagattagttggtagtaataatatgctcaacacattggacgagatcgaatgcaggacatatttaattaagatttctctacctactt |
26218131 |
T |
|
| Q |
302 |
gagaaagacattgattacttcatgagttgatcttttttcaaattctatcttagatgaatttgaaggtgnnnnnnnnctcgaattaccagtaataggagac |
401 |
Q |
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||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
26218130 |
gagaaagacatcgattacttcatgagtt-atcttttttcaaattctatcttagatgaatttgaaggtgttttttttctcgacttaccagtaataggagac |
26218032 |
T |
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| Q |
402 |
caagatattttccactacctaaaacttgtctcatcccaagaatgtaagaattagaatctttcatcggtgatgtgatattcctactacgctatatttctaa |
501 |
Q |
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| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||| |
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| T |
26218031 |
ccagatattttccactacctaaaacttgtctcaccccaagaatgtaagaattagaatctttcaccggtgatgtgatattcctactatgctatatttttaa |
26217932 |
T |
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| Q |
502 |
cttttgaaaattgattgactggcctgacatgtcttcttaagttttaaaaatattttgcatcactcaagcttcaccctatg |
581 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26217931 |
cttttgaaaattgattgactggcctgacatgtcttcttaagttttaaaaatattttgcatcactcaagcttcaccctatg |
26217852 |
T |
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