View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11090_low_30 (Length: 334)
Name: NF11090_low_30
Description: NF11090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11090_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 12 - 316
Target Start/End: Complemental strand, 28088914 - 28088606
Alignment:
| Q |
12 |
aagaagaattgagtcataatattgtcaatgttacaacttaattatctaaagtattacttatattaattagattcttcatttctgaaggnnnnnnnnncta |
111 |
Q |
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| T |
28088914 |
aagaagaattgagtcataatattgtcaatgttacaacttaattatctaaaggattacttatattaattagattcttcatttctgaaggaaaaaaaaacta |
28088815 |
T |
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| Q |
112 |
attagattattcattcttgttgttttaatctaaattaaaattactccatttttgtattgacgattaaagcttcaacttaactctatttcttatcatatac |
211 |
Q |
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| T |
28088814 |
attagattattcattcttgttgttttaatctaaattaaaattactccatttttgtattgacgattaaagcttcaacttaactctatttcttatcatatac |
28088715 |
T |
|
| Q |
212 |
tagatacaaaatgaaaatata--ttgaattcaaaatggcctaagaaattatattttaactagt--tgtcatttcactgatttgcataacctcatgaaaat |
307 |
Q |
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||||||||||||||||||||| |||||||||||||||||| || || ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
28088714 |
tagatacaaaatgaaaatatattttgaattcaaaatggcctcaggaaatatattttaactagttgtgtcatttcactgatttgcataacctcatgaaaat |
28088615 |
T |
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| Q |
308 |
gaacggatg |
316 |
Q |
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| T |
28088614 |
gaacggatg |
28088606 |
T |
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