View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11090_low_31 (Length: 329)
Name: NF11090_low_31
Description: NF11090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11090_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 51115738 - 51116060
Alignment:
| Q |
1 |
caatacaacctcgaaccgcactccaatgcaatgccgtttggccattacgatctgttgcatttatatctccaccatgatcgatgatgtactgagcaacagc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
51115738 |
caatacaacctcgaaccgcactccaatgcaatgccgtttggccattacgatctgttgcgtttatatctccaccatgatcgatgatgtactgagcaacagc |
51115837 |
T |
|
| Q |
101 |
agtatggttgttgagtgcagcccactgaatcacgtagtaacccaaaccatcaggctcggtaacaaggcaaccctcttgctccaccaatctacgcagcttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
51115838 |
agtatggttgttgagtgcagcccactgaatcacgtaataacccaaaccatcaggctcggtaacgaggcaaccctcttgctccaccaatctacgcagcttc |
51115937 |
T |
|
| Q |
201 |
tccaaatctccataagcagctgcagtgtacacatcatttcggagactgttttcagcaacttcaccagtggaagacaacgatatcgattgttgagggtgaa |
300 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
51115938 |
tccaaatctccataagcagccgcagtgtacacatcatttcggagactgtcttcagcaacttcaccggtggaagacaacgatatcgattgttgagggtgaa |
51116037 |
T |
|
| Q |
301 |
ccttctccatgaccttcatctca |
323 |
Q |
| |
|
|||||||||||||||| |||||| |
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| T |
51116038 |
ccttctccatgaccttgatctca |
51116060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 267
Target Start/End: Original strand, 51106419 - 51106668
Alignment:
| Q |
18 |
gcactccaatgcaatgccgtttggccattacgatctgttgcatttatatctccaccatgatcgatgatgtactgagcaacagcagtatggttgttgagtg |
117 |
Q |
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||||||||||||||||| || | |||| |||||||| ||||||||||||||||||||||||| |||||||||| |||||||| ||| ||||||||||||| |
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| T |
51106419 |
gcactccaatgcaatgctgtctagccactacgatcttttgcatttatatctccaccatgatcaatgatgtacttagcaacagaagtttggttgttgagtg |
51106518 |
T |
|
| Q |
118 |
cagcccactgaatcacgtagtaacccaaaccatcaggctcggtaacaaggcaaccctcttgctccaccaatctacgcagcttctccaaatctccataagc |
217 |
Q |
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|||||||||||| | ||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||| ||||||| |
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| T |
51106519 |
cagcccactgaagcgcgtagtaacccgtagcatcaggctcggtaacgaggcaaccctcttgctccaccaatctacgtagcttctctaaatcctcataagc |
51106618 |
T |
|
| Q |
218 |
agctgcagtgtacacatcatttcggagactgttttcagcaacttcaccag |
267 |
Q |
| |
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|| ||| |||| ||||| || |||| |||| |||||| ||| |||||| |
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| T |
51106619 |
agtcgcaatgtaaacatccttctggagtctgtcttcagcgactccaccag |
51106668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 84 - 232
Target Start/End: Complemental strand, 48032966 - 48032818
Alignment:
| Q |
84 |
atgtactgagcaacagcagtatggttgttgagtgcagcccactgaatcacgtagtaacccaaaccatcaggctcggtaacaaggcaaccctcttgctcca |
183 |
Q |
| |
|
|||||||||||| ||||||| |||| || || ||||||||||||| |||||||||||||||||||||||||| ||||||| ||||| || ||||| |
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|
| T |
48032966 |
atgtactgagcagcagcagtgcggttattaagagcagcccactgaagagcgtagtaacccaaaccatcaggctcgttaacaagacaaccttcaatctcca |
48032867 |
T |
|
| Q |
184 |
ccaatctacgcagcttctccaaatctccataagcagctgcagtgtacac |
232 |
Q |
| |
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|||||||| | |||||||||||||| |||||||| || ||||||||||| |
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|
| T |
48032866 |
ccaatctatgtagcttctccaaatccccataagccgcggcagtgtacac |
48032818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 48033824 - 48033760
Alignment:
| Q |
12 |
cgaaccgcactccaatgcaatgccgtttggccattacgatctgttgcatttatatctccaccatg |
76 |
Q |
| |
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||||||||||||||||||||||| || |||||| | ||||||||||||||| |||||||||||| |
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|
| T |
48033824 |
cgaaccgcactccaatgcaatgctgtctggccagaatgatctgttgcatttacatctccaccatg |
48033760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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