View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11090_low_32 (Length: 327)

Name: NF11090_low_32
Description: NF11090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11090_low_32
NF11090_low_32
[»] chr1 (1 HSPs)
chr1 (14-309)||(40810726-40811021)


Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 14 - 309
Target Start/End: Original strand, 40810726 - 40811021
Alignment:
Q  14 gcagagaagtaattgtgttactagggtcttaacgtgatgcacttggttgtgatgcgtgtatttcagtagttatcttgagttgtttatctttttgaatgcc 113  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40810726 gcagagaaggaattgtgttactagggtcttaacgtgatgcacttggttgtgatgcgtgtatttcagtagttatcttgagttgtttatctttttgaatgcc 40810825  T
Q  114 acttctcatctgcttagaaagtattctcctggcttgattgttatgcctttgtgcaataatgtatgtttctttgacatttctggtgctgttattccttaca 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40810826 acttctcatctgcttagaaagtattctcctggcttgattgttatgcctttgtgcaataatgtatgtttctttgacatttctggtgctgttattccttaca 40810925  T
Q  214 ttccattgcattcttgctctctgagctattaacagggcatgtttcaaagctttggttgaagttacgctcacctggtagttgctttttgtgcaaagt 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40810926 ttccattgcattcttgctctctgagctattaacagggcatgtttcaaagctttggttgaagttacgctcacctggtagttgctttttgtgcaaagt 40811021  T

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