View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11090_low_33 (Length: 324)

Name: NF11090_low_33
Description: NF11090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11090_low_33
NF11090_low_33
[»] chr7 (14 HSPs)
chr7 (91-221)||(12505686-12505814)
chr7 (94-221)||(12484259-12484383)
chr7 (107-221)||(21383575-21383685)
chr7 (155-221)||(12656934-12656996)
chr7 (84-136)||(20334214-20334266)
chr7 (106-169)||(30226079-30226143)
chr7 (101-169)||(2076495-2076563)
chr7 (101-169)||(2082914-2082982)
chr7 (106-169)||(23174981-23175045)
chr7 (106-221)||(2392828-2392942)
chr7 (54-138)||(3932303-3932387)
chr7 (106-169)||(14984666-14984729)
chr7 (106-169)||(15414277-15414340)
chr7 (106-169)||(48797719-48797782)
[»] chr6 (10 HSPs)
chr6 (93-221)||(1103363-1103487)
chr6 (94-219)||(14448537-14448659)
chr6 (91-192)||(22885218-22885316)
chr6 (30-192)||(22918021-22918178)
chr6 (91-192)||(22903176-22903274)
chr6 (91-221)||(3357047-3357176)
chr6 (98-203)||(26948179-26948279)
chr6 (93-174)||(3904762-3904843)
chr6 (100-144)||(10289056-10289100)
chr6 (106-169)||(16137683-16137746)
[»] chr3 (10 HSPs)
chr3 (28-136)||(27716259-27716369)
chr3 (91-203)||(43902105-43902213)
chr3 (54-138)||(22450178-22450262)
chr3 (20-104)||(27646911-27646990)
chr3 (100-174)||(8531380-8531455)
chr3 (176-216)||(5535301-5535341)
chr3 (91-174)||(19584005-19584089)
chr3 (93-163)||(10082380-10082451)
chr3 (91-137)||(2167758-2167804)
chr3 (106-169)||(9031482-9031545)
[»] chr1 (4 HSPs)
chr1 (64-174)||(21433900-21434011)
chr1 (92-192)||(4650294-4650390)
chr1 (106-163)||(49086698-49086756)
chr1 (106-169)||(33062380-33062443)
[»] scaffold0054 (1 HSPs)
scaffold0054 (91-192)||(8735-8833)
[»] chr2 (11 HSPs)
chr2 (101-203)||(45550030-45550134)
chr2 (91-174)||(18593555-18593637)
chr2 (93-174)||(15324997-15325079)
chr2 (100-203)||(17395544-17395644)
chr2 (92-221)||(8163026-8163152)
chr2 (106-169)||(18765670-18765733)
chr2 (92-192)||(31067567-31067664)
chr2 (155-203)||(8944777-8944821)
chr2 (92-203)||(25867152-25867260)
chr2 (100-202)||(28645737-28645836)
chr2 (101-164)||(15328298-15328361)
[»] scaffold0205 (1 HSPs)
scaffold0205 (55-174)||(9915-10035)
[»] chr5 (7 HSPs)
chr5 (100-174)||(24394620-24394695)
chr5 (92-221)||(23224889-23225014)
chr5 (94-198)||(19006614-19006714)
chr5 (101-169)||(11204711-11204779)
chr5 (106-163)||(26183342-26183399)
chr5 (106-169)||(7898016-7898079)
chr5 (106-169)||(17920885-17920948)
[»] chr4 (11 HSPs)
chr4 (91-163)||(17871610-17871683)
chr4 (91-221)||(39668473-39668599)
chr4 (54-139)||(56078964-56079049)
chr4 (87-139)||(12607257-12607309)
chr4 (106-169)||(22554964-22555027)
chr4 (106-169)||(25354737-25354800)
chr4 (93-174)||(11865210-11865292)
chr4 (93-139)||(24608687-24608733)
chr4 (109-169)||(13268843-13268904)
chr4 (106-169)||(23541238-23541301)
chr4 (106-169)||(46741851-46741914)
[»] chr8 (5 HSPs)
chr8 (54-126)||(27932797-27932869)
chr8 (106-169)||(23249729-23249792)
chr8 (106-163)||(24482312-24482370)
chr8 (106-169)||(17880840-17880904)
chr8 (106-169)||(17279883-17279946)
[»] scaffold0328 (1 HSPs)
scaffold0328 (65-125)||(4064-4124)
[»] scaffold0062 (1 HSPs)
scaffold0062 (100-164)||(2184-2249)


Alignment Details
Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 91 - 221
Target Start/End: Original strand, 12505686 - 12505814
Alignment:
Q  91 aacacaagatatttattaacccagttcggtgcaacgtcacttacatct-gagggct-ccaagccaagaaggaaatctactataatatatagtattagttt 188  Q
    |||||||||||||| |||||||||||||||| |||||||| ||||||| | ||||| |||||| | |||||||||||||||||    ||||||| |||||    
T  12505686 aacacaagatatttgttaacccagttcggtgtaacgtcacctacatctggggggctaccaagctaggaaggaaatctactata----atagtatcagttt 12505781  T
Q  189 gaagcctgcataaactatctccagtctactagc 221  Q
    ||||||| | |||||||||||||||||||||||    
T  12505782 gaagccttcgtaaactatctccagtctactagc 12505814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 94 - 221
Target Start/End: Original strand, 12484259 - 12484383
Alignment:
Q  94 acaagatatttattaacccagttcggtgcaacgtcacttacatct-gagggct-ccaagccaagaaggaaatctactataatatatagtattagtttgaa 191  Q
    ||||||||||| |||||| ||||||||| |||||||| ||||||| | ||||| |||||| | |||||||||||||||||    ||||||| ||||||||    
T  12484259 acaagatatttgttaaccaagttcggtgtaacgtcacctacatctggggggctaccaagctaggaaggaaatctactata----atagtatcagtttgaa 12484354  T
Q  192 gcctgcataaactatctccagtctactagc 221  Q
    |||| |||||||| ||||||||||||||||    
T  12484355 gccttcataaact-tctccagtctactagc 12484383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 107 - 221
Target Start/End: Complemental strand, 21383685 - 21383575
Alignment:
Q  107 taacccagttcggtgcaacgtcacttacatctgagggct-ccaagccaagaaggaaatctactataatatatagtattagtttgaagcctgcataaacta 205  Q
    |||||||||| ||||||||||||| ||| |||  || || |||||||| ||||||||| ||||||||||    ||||||||||||||| ||||||||| |    
T  21383685 taacccagtttggtgcaacgtcacatacgtctt-ggactaccaagccaggaaggaaatttactataata----gtattagtttgaagcatgcataaacaa 21383591  T
Q  206 tctccagtctactagc 221  Q
     |||||||||||||||    
T  21383590 cctccagtctactagc 21383575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 155 - 221
Target Start/End: Original strand, 12656934 - 12656996
Alignment:
Q  155 gaaggaaatctactataatatatagtattagtttgaagcctgcataaactatctccagtctactagc 221  Q
    ||||||||||||||||||||    |||| | ||||||||||||||||||||||||||||||||||||    
T  12656934 gaaggaaatctactataata----gtatcaatttgaagcctgcataaactatctccagtctactagc 12656996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 84 - 136
Target Start/End: Complemental strand, 20334266 - 20334214
Alignment:
Q  84 aaggaagaacacaagatatttattaacccagttcggtgcaacgtcacttacat 136  Q
    |||||||||| ||||||||||| |||||||||||||||||| ||||| |||||    
T  20334266 aaggaagaacgcaagatatttagtaacccagttcggtgcaatgtcacatacat 20334214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 106 - 169
Target Start/End: Original strand, 30226079 - 30226143
Alignment:
Q  106 ttaacccagttcggtgcaacgtcacttacatctgagggct-ccaagccaagaaggaaatctacta 169  Q
    ||||||||||||||||||||||||| |||||||| ||||| ||||| || |||||||||| ||||    
T  30226079 ttaacccagttcggtgcaacgtcacctacatctgggggctaccaagtcaggaaggaaatccacta 30226143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 169
Target Start/End: Original strand, 2076495 - 2076563
Alignment:
Q  101 atttattaacccagttcggtgcaacgtcacttacatctgagggct-ccaagccaagaaggaaatctacta 169  Q
    |||| ||||||||||||||||||||||||| ||| |||| ||||| |||||||| |||||||||| ||||    
T  2076495 atttgttaacccagttcggtgcaacgtcacctac-tctgggggctaccaagccatgaaggaaatccacta 2076563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 169
Target Start/End: Original strand, 2082914 - 2082982
Alignment:
Q  101 atttattaacccagttcggtgcaacgtcacttacatctgagggct-ccaagccaagaaggaaatctacta 169  Q
    |||| ||||||||||||||||||||||||| ||| |||| ||||| |||||||| |||||||||| ||||    
T  2082914 atttgttaacccagttcggtgcaacgtcacctac-tctgggggctaccaagccatgaaggaaatccacta 2082982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 169
Target Start/End: Complemental strand, 23175045 - 23174981
Alignment:
Q  106 ttaacccagttcggtgcaacgtcacttacatctgagggct-ccaagccaagaaggaaatctacta 169  Q
    |||||||||||||||||||| |||| |||||||  ||||| |||||||| |||||||||| ||||    
T  23175045 ttaacccagttcggtgcaacatcacctacatctaggggctaccaagccaggaaggaaatccacta 23174981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 221
Target Start/End: Complemental strand, 2392942 - 2392828
Alignment:
Q  106 ttaacccagttcggtgcaacgtcacttacatctgagggct-ccaagccaagaaggaaatctactataatatatagtattagtttgaagcct--gcataaa 202  Q
    |||| |||||||||||||||||||| ||| | |||||||| |||||| ||||| |||||  ||||||    |||||||||||||||| | |   || |||    
T  2392942 ttaatccagttcggtgcaacgtcacctacgtttgagggctaccaagctaagaatgaaattcactata----atagtattagtttgaaacatacacaaaaa 2392847  T
Q  203 ctatctccagtctactagc 221  Q
    ||||||| |||||||||||    
T  2392846 ctatctcaagtctactagc 2392828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 3932303 - 3932387
Alignment:
Q  54 caatgaacaataataaagtaaagtgtagagaaggaagaacacaagatatttattaacccagttcggtgcaacgtcacttacatct 138  Q
    |||| ||||||||||||||| |||| |   ||||||||||| ||||  |||  |||| ||||||||||||||||||  |||||||    
T  3932303 caataaacaataataaagtagagtgcaagaaaggaagaacaaaagaagtttggtaacacagttcggtgcaacgtcatctacatct 3932387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 169
Target Start/End: Original strand, 14984666 - 14984729
Alignment:
Q  106 ttaacccagttcggtgcaacgtcacttacatctgagggct-ccaagccaagaaggaaatctacta 169  Q
    ||||||||||||||||||||||||| ||| |||| |||||  ||||||| |||||||||| ||||    
T  14984666 ttaacccagttcggtgcaacgtcacctac-tctgggggctatcaagccaggaaggaaatccacta 14984729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 169
Target Start/End: Original strand, 15414277 - 15414340
Alignment:
Q  106 ttaacccagttcggtgcaacgtcacttacatctgagggct-ccaagccaagaaggaaatctacta 169  Q
    ||||||||||||||||||||||||| ||| |||| |||||  ||||||| |||||||||| ||||    
T  15414277 ttaacccagttcggtgcaacgtcacctac-tctgggggctatcaagccaggaaggaaatccacta 15414340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 169
Target Start/End: Complemental strand, 48797782 - 48797719
Alignment:
Q  106 ttaacccagttcggtgcaacgtcacttacatctgagggct-ccaagccaagaaggaaatctacta 169  Q
    |||||||||||| |||||||||||| ||| |||| ||||| |||||||| |||||||||| ||||    
T  48797782 ttaacccagttcagtgcaacgtcacctac-tctgggggctaccaagccaggaaggaaatccacta 48797719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 93 - 221
Target Start/End: Complemental strand, 1103487 - 1103363
Alignment:
Q  93 cacaagatatttattaacccagttcggtgcaacgtcacttacatctgagggct-ccaagccaagaaggaaatctactataatatatagtattagtttgaa 191  Q
    |||||| ||||| ||||||||||||||||||||| ||||||| |||| ||||| |||||||| ||| |||||||||||||    ||||||||||||||||    
T  1103487 cacaagttattttttaacccagttcggtgcaacgccacttacgtctg-gggctaccaagccaggaaagaaatctactata----atagtattagtttgaa 1103393  T
Q  192 gcctgcataaactatctccagtctactagc 221  Q
    || ||||||||||||||| ||| |||||||    
T  1103392 gcatgcataaactatctctagtatactagc 1103363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 94 - 219
Target Start/End: Complemental strand, 14448659 - 14448537
Alignment:
Q  94 acaagatatttattaacccagttcggtgcaacgtcacttacatctgagggctc-caagccaagaaggaaatctactataatatatagtattagtttgaag 192  Q
    ||||| ||||| |||||| ||||||||||||||||||||| |||| ||||||  |||||| ||||||||||| |||||    ||||||||||||||||||    
T  14448659 acaagttatttgttaacctagttcggtgcaacgtcacttagatcttagggctatcaagcctagaaggaaatccactat----tatagtattagtttgaag 14448564  T
Q  193 cctgcataaactatctccagtctacta 219  Q
    ||||||||||| | |||| ||||||||    
T  14448563 cctgcataaacaacctccggtctacta 14448537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 91 - 192
Target Start/End: Complemental strand, 22885316 - 22885218
Alignment:
Q  91 aacacaagatatttattaacccagttcggtgcaacgtcacttacatctgagggc-tccaagccaagaaggaaatctactataatatatagtattagtttg 189  Q
    |||||||||||||| |||||||||| |||||||||||||| |||||||| |||| ||||||||| |||||||||||||||||    ||||||||||||||    
T  22885316 aacacaagatatttgttaacccagtacggtgcaacgtcacctacatctgggggcatccaagccaggaaggaaatctactata----atagtattagtttg 22885221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 30 - 192
Target Start/End: Complemental strand, 22918178 - 22918021
Alignment:
Q  30 aacaaatactttaacacaattaaccaatgaacaataataaagtaaagtgtagagaaggaag-aacacaagatatttattaacccagttcggtgcaacgtc 128  Q
    ||||||||||| |||||||| ||| |||||||||   |||||||||||  | ||||||||  |||||||||||||| ||||||||||  |||||||||||    
T  22918178 aacaaatactt-aacacaataaac-aatgaacaactttaaagtaaagtaca-agaaggaaataacacaagatatttgttaacccagtatggtgcaacgtc 22918082  T
Q  129 acttacatctgagggc-tccaagccaagaaggaaatctactataatatatagtattagtttgaag 192  Q
    || ||||||||||| | ||||||||| |||||||||   |||||||| |||||||||||||||||    
T  22918081 acctacatctgaggacatccaagccaggaaggaaat---ctataata-atagtattagtttgaag 22918021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 91 - 192
Target Start/End: Complemental strand, 22903274 - 22903176
Alignment:
Q  91 aacacaagatatttattaacccagttcggtgcaacgtcacttacatctgagggc-tccaagccaagaaggaaatctactataatatatagtattagtttg 189  Q
    |||||||||||||| |||||||||| |||||||||||||| |||||||| || | ||||||||| |||| ||||||||||||    ||||||||||||||    
T  22903274 aacacaagatatttgttaacccagtgcggtgcaacgtcacctacatctggggacatccaagccaggaagaaaatctactata----atagtattagtttg 22903179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 91 - 221
Target Start/End: Complemental strand, 3357176 - 3357047
Alignment:
Q  91 aacacaagatatttattaacccagttcggtgcaacgtcacttacatctgagggct-ccaagccaagaaggaaatctactataatatatagtattagtttg 189  Q
    |||||||| ||||| |||||||| || ||||||| ||||| || ||||  ||||| ||||||||||||||||||  |||||||||    |||||||||||    
T  3357176 aacacaaggtatttgttaacccaattaggtgcaatgtcacctatatctaggggctaccaagccaagaaggaaattcactataata----gtattagtttg 3357081  T
Q  190 aagcctgcataaa--ctatctccagtctactagc 221  Q
    |||| | ||||||  |||||||||||||||||||    
T  3357080 aagcgtacataaaaactatctccagtctactagc 3357047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 98 - 203
Target Start/End: Complemental strand, 26948279 - 26948179
Alignment:
Q  98 gatatttattaacccagttcggtgcaacgtcacttacatctgagggctccaagccaagaaggaaatctactataatatatagtattagtttgaagcctgc 197  Q
    ||||||| ||||| || |||| || ||||||||||||||||  ||||||||||||| |||||||||  | ||||    |||||||||||||||||| |||    
T  26948279 gatatttgttaacacacttcgatgtaacgtcacttacatct-cgggctccaagccaggaaggaaattcaatata----atagtattagtttgaagcttgc 26948185  T
Q  198 ataaac 203  Q
    ||||||    
T  26948184 ataaac 26948179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 174
Target Start/End: Complemental strand, 3904843 - 3904762
Alignment:
Q  93 cacaagatatttattaacccagttcggtgcaacgtcacttacatctgagggct-ccaagccaagaaggaaatctactataata 174  Q
    |||||||||||| |||||| ||||||||| |||||| | ||| | || ||||| |||||||| |||||||||| |||||||||    
T  3904843 cacaagatatttgttaacctagttcggtgaaacgtcccctacgtttg-gggctaccaagccaggaaggaaatcaactataata 3904762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 10289056 - 10289100
Alignment:
Q  100 tatttattaacccagttcggtgcaacgtcacttacatctgagggc 144  Q
    ||||| ||||||||||||||||||| |||||||| ||||| ||||    
T  10289056 tatttgttaacccagttcggtgcaatgtcacttatatctgggggc 10289100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 169
Target Start/End: Complemental strand, 16137746 - 16137683
Alignment:
Q  106 ttaacccagttcggtgcaacgtcacttacatctgagggct-ccaagccaagaaggaaatctacta 169  Q
    ||||||||||| | ||||||||||| ||| |||||||||| |||||||| |||||||||| ||||    
T  16137746 ttaacccagtttgatgcaacgtcacctac-tctgagggctaccaagccaggaaggaaatccacta 16137683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 28 - 136
Target Start/End: Original strand, 27716259 - 27716369
Alignment:
Q  28 acaacaaatactttaacacaattaaccaatgaacaataataaagtaaagtgtagag--aaggaagaacacaagatatttattaacccagttcggtgcaac 125  Q
    ||||||||||||||||||||||||| |||  |||| ||||||||||||||| ||||  || ||||||||||||||||||  ||||| ||||| |||||||    
T  27716259 acaacaaatactttaacacaattaatcaacaaacagtaataaagtaaagtgcagagaaaaagaagaacacaagatatttggtaacctagttcagtgcaac 27716358  T
Q  126 gtcacttacat 136  Q
    ||||| |||||    
T  27716359 gtcacctacat 27716369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 91 - 203
Target Start/End: Complemental strand, 43902213 - 43902105
Alignment:
Q  91 aacacaagatatttattaacccagttcggtgcaacgtcacttacatctgagggctccaagccaagaaggaaatctactataatatatagtattagtttga 190  Q
    |||||||| ||||| |||| ||| |||||||||||||||| ||||| || ||||||||||||| ||| |||||||||||||    | |||||||||||||    
T  43902213 aacacaaggtatttgttaatccaattcggtgcaacgtcacctacatttgggggctccaagccaggaaagaaatctactata----acagtattagtttga 43902118  T
Q  191 agcctgcataaac 203  Q
    || || |||||||    
T  43902117 agtctacataaac 43902105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 54 - 138
Target Start/End: Complemental strand, 22450262 - 22450178
Alignment:
Q  54 caatgaacaataataaagtaaagtgtagagaaggaagaacacaagatatttattaacccagttcggtgcaacgtcacttacatct 138  Q
    |||| |||| ||||||| |||||||||| ||||||||||||||||| ||||  ||||  |||||||||||||  ||| |||||||    
T  22450262 caataaacagtaataaaataaagtgtagggaaggaagaacacaagagatttgctaacttagttcggtgcaacaccacctacatct 22450178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 27646990 - 27646911
Alignment:
Q  20 acaatgttacaacaaatactttaacacaattaaccaatgaacaataataaagtaaagtgtagagaaggaagaacacaagatattt 104  Q
    ||||||| |||||||||||||| |||||||||||||     || ||||||||||||||| |  |||||||||||| |||||||||    
T  27646990 acaatgtaacaacaaatactttcacacaattaacca-----cagtaataaagtaaagtgcaaggaaggaagaacaaaagatattt 27646911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 174
Target Start/End: Original strand, 8531380 - 8531455
Alignment:
Q  100 tatttattaacccagttcggtgcaacgtcacttacatctgagggc-tccaagccaagaaggaaatctactataata 174  Q
    ||||| ||||||||||||||||||||||||| ||| ||||  ||| |||||||||  ||||||||| |||||||||    
T  8531380 tatttgttaacccagttcggtgcaacgtcacctacctctggtggcatccaagccagaaaggaaatccactataata 8531455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 5535301 - 5535341
Alignment:
Q  176 atagtattagtttgaagcctgcataaactatctccagtcta 216  Q
    |||||||||||||||||||| |||| |||||||||||||||    
T  5535301 atagtattagtttgaagcctccatagactatctccagtcta 5535341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 174
Target Start/End: Complemental strand, 19584089 - 19584005
Alignment:
Q  91 aacacaagatatttattaacccagttcggtgcaacgtcacttacatct-gagggctccaagccaagaaggaaatctactataata 174  Q
    |||||| ||||||| |||||||||||| |||||| ||||| ||||||| | ||  ||||||||| |||| ||||| |||||||||    
T  19584089 aacacatgatatttgttaacccagttcagtgcaatgtcacctacatctaggggaatccaagccaggaagaaaatccactataata 19584005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 93 - 163
Target Start/End: Complemental strand, 10082451 - 10082380
Alignment:
Q  93 cacaagatatttattaacccagttcggtgcaacgtcacttacatctgagggct-ccaagccaagaaggaaat 163  Q
    |||||| | ||| ||||||||||||||||||||||||| |||||||  ||||| |||||| | |||||||||    
T  10082451 cacaagttgtttgttaacccagttcggtgcaacgtcacctacatctaggggctaccaagctaggaaggaaat 10082380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 137
Target Start/End: Complemental strand, 2167804 - 2167758
Alignment:
Q  91 aacacaagatatttattaacccagttcggtgcaacgtcacttacatc 137  Q
    ||||||||||||||||||||  |||||| ||||||||||| ||||||    
T  2167804 aacacaagatatttattaacttagttcgatgcaacgtcacctacatc 2167758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 169
Target Start/End: Complemental strand, 9031545 - 9031482
Alignment:
Q  106 ttaacccagttcggtgcaacgtcacttacatctgagggct-ccaagccaagaaggaaatctacta 169  Q
    ||||||||||||||||||||||||| ||| |||| ||||| ||||| || |||||||||| ||||    
T  9031545 ttaacccagttcggtgcaacgtcacctac-tctgggggctaccaagtcaggaaggaaatccacta 9031482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 64 - 174
Target Start/End: Original strand, 21433900 - 21434011
Alignment:
Q  64 taataaagtaaagtgtagagaaggaagaacacaagatatttattaacccagttcggtgcaacgtcacttacatctgagggc-tccaagccaagaaggaaa 162  Q
    ||||||||||||||| || |||||||||||||||| |||||  ||||||| ||| ||||||| |||| ||||||||||||| | |||| |||||||||||    
T  21433900 taataaagtaaagtgcagggaaggaagaacacaagttatttgctaacccaattcagtgcaacttcacctacatctgagggcattcaagtcaagaaggaaa 21433999  T
Q  163 tctactataata 174  Q
    || |||||||||    
T  21434000 tccactataata 21434011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 92 - 192
Target Start/End: Complemental strand, 4650390 - 4650294
Alignment:
Q  92 acacaagatatttattaacccagttcggtgcaacgtcacttacatctgagggctccaagccaagaaggaaatctactataatatatagtattagtttgaa 191  Q
    ||||||| ||||| |||| | ||||  |||||||||||| ||||| |  |||||||||| || |||||||||| ||||||    ||||||||||||||||    
T  4650390 acacaagttatttgttaatctagttatgtgcaacgtcacctacatttaggggctccaagtcaggaaggaaatccactata----atagtattagtttgaa 4650295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 163
Target Start/End: Complemental strand, 49086756 - 49086698
Alignment:
Q  106 ttaacccagttcggtgcaacgtcacttacatctgagggct-ccaagccaagaaggaaat 163  Q
    ||||||||||||||||||||||||| ||||| || ||||| |||||||| ||| |||||    
T  49086756 ttaacccagttcggtgcaacgtcacctacatgtgggggctaccaagccaggaaagaaat 49086698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 169
Target Start/End: Original strand, 33062380 - 33062443
Alignment:
Q  106 ttaacccagttcggtgcaacgtcacttacatctgagggct-ccaagccaagaaggaaatctacta 169  Q
    ||||||||||||||||||||||||| ||| |||| ||||| ||||||||  ||||||||| ||||    
T  33062380 ttaacccagttcggtgcaacgtcacctac-tctgggggctaccaagccagaaaggaaatccacta 33062443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 91 - 192
Target Start/End: Complemental strand, 8833 - 8735
Alignment:
Q  91 aacacaagatatttattaacccagttcggtgcaacgtcacttacatctgagggc-tccaagccaagaaggaaatctactataatatatagtattagtttg 189  Q
    |||||||||||||| |||||||||| |||||||||||||| |||||||| || | ||||||||| |||| ||||||||||||    ||||||||||||||    
T  8833 aacacaagatatttgttaacccagtacggtgcaacgtcacctacatctggggacatccaagccaggaagaaaatctactata----atagtattagtttg 8738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 101 - 203
Target Start/End: Original strand, 45550030 - 45550134
Alignment:
Q  101 atttattaacccagttcggtgcaacgtcacttacatctgagggctccaagccaagaaggaaatctactataata--tatagtattagtttgaagcctgca 198  Q
    |||| |||||| ||||||||||||| |||| |||||||  ||||||||||||| ||| |||||| |||||||||   ||||||||||||||| ||| |||    
T  45550030 atttgttaaccaagttcggtgcaacatcacctacatctaggggctccaagccaggaacgaaatccactataatagtaatagtattagtttgatgccggca 45550129  T
Q  199 taaac 203  Q
    |||||    
T  45550130 taaac 45550134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 174
Target Start/End: Original strand, 18593555 - 18593637
Alignment:
Q  91 aacacaagatatttattaacccagttcggtgcaacgtcacttacatctgagggctccaagccaagaaggaaatctactataata 174  Q
    |||||||  ||||| ||||||||||||||||||| ||||| |||||||| ||  ||||||||||||||| |||| |||||||||    
T  18593555 aacacaaagtatttgttaacccagttcggtgcaatgtcacctacatctggggcatccaagccaagaagg-aatccactataata 18593637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 93 - 174
Target Start/End: Original strand, 15324997 - 15325079
Alignment:
Q  93 cacaagatatttattaacccagttcggtgcaacgtcacttacatctgagggc-tccaagccaagaaggaaatctactataata 174  Q
    |||||| ||||| |||||||||||||||||||| ||||  |||||| | ||| ||||||||| |||| |||||||||||||||    
T  15324997 cacaagttatttgttaacccagttcggtgcaacttcaccaacatcttaaggcatccaagccaggaagaaaatctactataata 15325079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 203
Target Start/End: Original strand, 17395544 - 17395644
Alignment:
Q  100 tatttattaacccagttcggtgcaacgtcacttacatctgagggctc-caagccaagaaggaaatctactataatatatagtattagtttgaagcctgca 198  Q
    ||||| || |||||||||||||||||||| | ||  | || |||||  ||||||| |||||||||| |||||||||    ||||||||||||||||||||    
T  17395544 tatttgtttacccagttcggtgcaacgtcgcctaagtgtgggggctatcaagccaggaaggaaatccactataata----gtattagtttgaagcctgca 17395639  T
Q  199 taaac 203  Q
    |||||    
T  17395640 taaac 17395644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 221
Target Start/End: Complemental strand, 8163152 - 8163026
Alignment:
Q  92 acacaagatatttattaacccagttcggtgcaacgtcacttacatctgagggct-ccaagccaagaaggaaatctactataatatatagtattagtttga 190  Q
    ||||||| ||||| ||||| ||||||| ||||| ||||| ||| |||  ||||| ||||| || |||| ||||| ||||||| |    |||| |||||||    
T  8163152 acacaagttatttgttaacacagttcgatgcaatgtcacgtacgtcttggggctaccaagtcaggaagaaaatccactataaca----gtatcagtttga 8163057  T
Q  191 agcctgcataaactatctccagtctactagc 221  Q
    ||| || ||||||||||| ||||||||||||    
T  8163056 agcatgtataaactatcttcagtctactagc 8163026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 169
Target Start/End: Original strand, 18765670 - 18765733
Alignment:
Q  106 ttaacccagttcggtgcaacgtcacttacatctgagggct-ccaagccaagaaggaaatctacta 169  Q
    ||||||||||||||||||||||||| ||| |||| ||||| |||||||| |||||||||| ||||    
T  18765670 ttaacccagttcggtgcaacgtcacctac-tctgggggctaccaagccaggaaggaaatccacta 18765733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 192
Target Start/End: Complemental strand, 31067664 - 31067567
Alignment:
Q  92 acacaagatatttattaacccagttcggtgcaacgtcacttacatctgagggct-ccaagccaagaaggaaatctactataatatatagtattagtttga 190  Q
    ||||||| ||||| |||||| |||| ||||||||||||| ||| |||| ||||| ||||  || |||||||||| ||||||    |||||||||||||||    
T  31067664 acacaagttatttgttaacctagtttggtgcaacgtcacctacgtctgggggctaccaattcaggaaggaaatccactata----atagtattagtttga 31067569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 8944777 - 8944821
Alignment:
Q  155 gaaggaaatctactataatatatagtattagtttgaagcctgcataaac 203  Q
    ||||||||||||||||||||    |||||||||||||||||||||||||    
T  8944777 gaaggaaatctactataata----gtattagtttgaagcctgcataaac 8944821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 92 - 203
Target Start/End: Original strand, 25867152 - 25867260
Alignment:
Q  92 acacaagatatttattaacccagttcggtgcaacgtcacttacatctgagggct-ccaagccaagaaggaaatctactataatatatagtattagtttga 190  Q
    ||||||| ||||| |||||  |||| ||||||||||||| ||||||||  |||| ||| |||| |||||||||| | |||     ||||||||| |||||    
T  25867152 acacaagttatttcttaacttagtttggtgcaacgtcacctacatctggaggctaccaggccaggaaggaaatccagtat----gatagtattaatttga 25867247  T
Q  191 agcctgcataaac 203  Q
    |||||||||||||    
T  25867248 agcctgcataaac 25867260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 202
Target Start/End: Complemental strand, 28645836 - 28645737
Alignment:
Q  100 tatttattaacccagttcggtgcaacgtcacttacatctgagggct-ccaagccaagaaggaaatctactataatatatagtattagtttgaagcctgca 198  Q
    |||||||||||| ||||| |||||||||||| |||||| | ||| | ||||| || ||||||||   ||||||    |||||||||||||||||| ||||    
T  28645836 tatttattaaccaagttctgtgcaacgtcacctacatccgggggataccaagtcaggaaggaaaatcactata----atagtattagtttgaagcatgca 28645741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 164
Target Start/End: Original strand, 15328298 - 15328361
Alignment:
Q  101 atttattaacccagttcggtgcaacgtcacttacatctgagggct-ccaagccaagaaggaaatc 164  Q
    |||| ||||||||||||||||||| || || ||| |||| ||||| |||||||||||||||||||    
T  15328298 atttgttaacccagttcggtgcaatgttacctac-tctgggggctaccaagccaagaaggaaatc 15328361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 174
Target Start/End: Original strand, 9915 - 10035
Alignment:
Q  55 aatgaacaataataaagtaaagtgtagagaaggaagaacacaagatatttattaacccagttcggtgcaacgtcacttacatctgagggct-ccaagcca 153  Q
    |||||||| ||||| | ||||||| || ||||||||||||||| |||||  || ||||||||||||||||| | || |||||||| ||||| | ||||||    
T  9915 aatgaacagtaatatattaaagtgcagggaaggaagaacacaaaatattggttgacccagttcggtgcaacctaacctacatctgggggctacaaagcca 10014  T
Q  154 agaaggaaatctactataata 174  Q
     |||||||||  |||||||||    
T  10015 ggaaggaaattcactataata 10035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 100 - 174
Target Start/End: Original strand, 24394620 - 24394695
Alignment:
Q  100 tatttattaacccagttcggtgcaacgtcacttacatctgagggc-tccaagccaagaaggaaatctactataata 174  Q
    ||||| |||||||| |||||||||||||||| |||||||| |||| ||||||||| |||||||||| |||||||||    
T  24394620 tatttgttaacccatttcggtgcaacgtcacctacatctgggggcatccaagccaggaaggaaatccactataata 24394695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 92 - 221
Target Start/End: Original strand, 23224889 - 23225014
Alignment:
Q  92 acacaagatatttattaacccagttcggtgcaacgtcacttacatctgagggctccaagccaagaaggaaatctactataatatatagtattagtttgaa 191  Q
    ||||||| ||||| |||||||||||| |||||| |||||||||||| ||||   ||||| || |||| ||||| | ||||    ||||||||||||||||    
T  23224889 acacaagttatttgttaacccagttcagtgcaatgtcacttacatccgaggctaccaagtcaggaagaaaatccattata----atagtattagtttgaa 23224984  T
Q  192 gcctgcataaactatctccagtctactagc 221  Q
    || ||||||||| | ||| | |||||||||    
T  23224985 gcttgcataaacaacctcaaatctactagc 23225014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 198
Target Start/End: Complemental strand, 19006714 - 19006614
Alignment:
Q  94 acaagatatttattaacccagttcggtgcaacgtcacttacatctgagggctccaagccaagaaggaaatctactataatatatagtattagtttgaagc 193  Q
    ||||| ||||| |||||||| |||||||||| |||||  ||||||| ||||||||||  | || ||||||| |||||||||    |||||||||||||||    
T  19006714 acaaggtatttgttaacccatttcggtgcaatgtcaccgacatctgggggctccaagtaaggacggaaatccactataata----gtattagtttgaagc 19006619  T
Q  194 ctgca 198  Q
     ||||    
T  19006618 atgca 19006614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 169
Target Start/End: Original strand, 11204711 - 11204779
Alignment:
Q  101 atttattaacccagttcggtgcaacgtcacttacatctgagggct-ccaagccaagaaggaaatctacta 169  Q
    |||| ||||||||||||||||||||||||| ||| |||| ||||| |||||||| |||||||||| ||||    
T  11204711 atttgttaacccagttcggtgcaacgtcacctac-tctgggggctaccaagccaggaaggaaatccacta 11204779  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 163
Target Start/End: Complemental strand, 26183399 - 26183342
Alignment:
Q  106 ttaacccagttcggtgcaacgtcacttacatctgagggct-ccaagccaagaaggaaat 163  Q
    ||||||||||||||||||||||||| ||| |||| ||||| |||||||| |||||||||    
T  26183399 ttaacccagttcggtgcaacgtcacctac-tctgggggctaccaagccaggaaggaaat 26183342  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 169
Target Start/End: Complemental strand, 7898079 - 7898016
Alignment:
Q  106 ttaacccagttcggtgcaacgtcacttacatctgagggct-ccaagccaagaaggaaatctacta 169  Q
    ||||||||||||||||||||||||| ||| ||||  |||| |||||||| |||||||||| ||||    
T  7898079 ttaacccagttcggtgcaacgtcacctac-tctggaggctaccaagccaggaaggaaatccacta 7898016  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 169
Target Start/End: Complemental strand, 17920948 - 17920885
Alignment:
Q  106 ttaacccagttcggtgcaacgtcacttacatctgagggct-ccaagccaagaaggaaatctacta 169  Q
    ||||||||||||||||||||||||| ||| |||  ||||| |||||||| |||||||||| ||||    
T  17920948 ttaacccagttcggtgcaacgtcacctac-tctaggggctaccaagccaggaaggaaatccacta 17920885  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 91 - 163
Target Start/End: Complemental strand, 17871683 - 17871610
Alignment:
Q  91 aacacaagatatttattaacccagttcggtgcaacgtcacttacatctgagggct-ccaagccaagaaggaaat 163  Q
    |||||||||||||| || ||||||||||||||||| |||| |||||||||||||| ||||| || |||||||||    
T  17871683 aacacaagatatttcttgacccagttcggtgcaacttcacctacatctgagggctaccaagtcaggaaggaaat 17871610  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 91 - 221
Target Start/End: Complemental strand, 39668599 - 39668473
Alignment:
Q  91 aacacaagatatttattaacccagttcggtgcaacgtcacttacatctgagggctccaagccaagaaggaaatctactataatatatagtattagtttga 190  Q
    |||| ||| ||||| || ||| ||||||||||||||||| ||||||||| ||||||||| | | |||||||||  | ||||    ||||||||| |||||    
T  39668599 aacataaggtatttgttgaccaagttcggtgcaacgtcatttacatctgggggctccaacctaggaaggaaattcattata----atagtattactttga 39668504  T
Q  191 agcctgcataaactatctccagtctactagc 221  Q
    ||||||||||||| | |||| || |||||||    
T  39668503 agcctgcataaacaacctcctgtttactagc 39668473  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 54 - 139
Target Start/End: Original strand, 56078964 - 56079049
Alignment:
Q  54 caatgaacaataataaagtaaagtgtagagaaggaagaacacaagatatttattaacccagttcggtgcaacgtcacttacatctg 139  Q
    |||| |||| |||||||||||||||| | ||| ||||| ||||||| ||||  ||||||||||| |||||||||||| ||||||||    
T  56078964 caataaacattaataaagtaaagtgtggggaaagaagatcacaagagatttgataacccagttctgtgcaacgtcacctacatctg 56079049  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 87 - 139
Target Start/End: Original strand, 12607257 - 12607309
Alignment:
Q  87 gaagaacacaagatatttattaacccagttcggtgcaacgtcacttacatctg 139  Q
    ||||||||||||||||||  ||| |||||||||||||||||||| ||||||||    
T  12607257 gaagaacacaagatatttgataatccagttcggtgcaacgtcacctacatctg 12607309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 169
Target Start/End: Original strand, 22554964 - 22555027
Alignment:
Q  106 ttaacccagttcggtgcaacgtcacttacatctgagggct-ccaagccaagaaggaaatctacta 169  Q
    ||||||||||||||||||||||||| ||| ||||| |||| |||||||| |||||||||| ||||    
T  22554964 ttaacccagttcggtgcaacgtcacctac-tctgaaggctaccaagccaggaaggaaatccacta 22555027  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 169
Target Start/End: Complemental strand, 25354800 - 25354737
Alignment:
Q  106 ttaacccagttcggtgcaacgtcacttacatctgagggct-ccaagccaagaaggaaatctacta 169  Q
    ||||||||||||||||||||||||| ||| |||| ||||| |||||||| |||||||||| ||||    
T  25354800 ttaacccagttcggtgcaacgtcacctac-tctgggggctaccaagccaggaaggaaatccacta 25354737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 174
Target Start/End: Complemental strand, 11865292 - 11865210
Alignment:
Q  93 cacaagatatttattaacccagttcggtgcaacgtcacttacatctgagggct-ccaagccaagaaggaaatctactataata 174  Q
    |||||| ||||| |||||||||||||||||||||||   ||| |||| ||||| |||||||| |||| ||||  |||||||||    
T  11865292 cacaagttatttgttaacccagttcggtgcaacgtcttctacgtctgggggctaccaagccaggaagaaaattcactataata 11865210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 139
Target Start/End: Original strand, 24608687 - 24608733
Alignment:
Q  93 cacaagatatttattaacccagttcggtgcaacgtcacttacatctg 139  Q
    |||||| ||||| ||||||||||||||||||||||||| ||| ||||    
T  24608687 cacaagttatttgttaacccagttcggtgcaacgtcacctacgtctg 24608733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 169
Target Start/End: Original strand, 13268843 - 13268904
Alignment:
Q  109 acccagttcggtgcaacgtcacttacatctgagggct-ccaagccaagaaggaaatctacta 169  Q
    ||||||||||||||||| |||| |||||||| ||||| ||||| || |||||||||| ||||    
T  13268843 acccagttcggtgcaacttcacctacatctgggggctaccaagtcaggaaggaaatccacta 13268904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 169
Target Start/End: Original strand, 23541238 - 23541301
Alignment:
Q  106 ttaacccagttcggtgcaacgtcacttacatctgagggct-ccaagccaagaaggaaatctacta 169  Q
    ||||||||||||||||||||||||| ||| ||||  |||| |||||||| |||||||||| ||||    
T  23541238 ttaacccagttcggtgcaacgtcacctac-tctggaggctaccaagccaggaaggaaatccacta 23541301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 169
Target Start/End: Complemental strand, 46741914 - 46741851
Alignment:
Q  106 ttaacccagttcggtgcaacgtcacttacatctgagggct-ccaagccaagaaggaaatctacta 169  Q
    |||||||| |||||||||||||||| ||| |||| ||||| |||||||| |||||||||| ||||    
T  46741914 ttaacccatttcggtgcaacgtcacctac-tctgggggctaccaagccatgaaggaaatccacta 46741851  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 54 - 126
Target Start/End: Complemental strand, 27932869 - 27932797
Alignment:
Q  54 caatgaacaataataaagtaaagtgtagagaaggaagaacacaagatatttattaacccagttcggtgcaacg 126  Q
    |||| |||||||||||||||||||||||  ||| |||||||||| ||||||  ||||  ||||||||||||||    
T  27932869 caataaacaataataaagtaaagtgtaggaaagaaagaacacaaaatatttggtaacatagttcggtgcaacg 27932797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 169
Target Start/End: Original strand, 23249729 - 23249792
Alignment:
Q  106 ttaacccagttcggtgcaacgtcacttacatctgagggct-ccaagccaagaaggaaatctacta 169  Q
    |||||||| |||||||||||||||| ||| |||| ||||| ||||||||||||||||||| ||||    
T  23249729 ttaacccaattcggtgcaacgtcacctac-tctgggggctaccaagccaagaaggaaatccacta 23249792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 163
Target Start/End: Original strand, 24482312 - 24482370
Alignment:
Q  106 ttaacccagttcggtgcaacgtcacttacatctgagggct-ccaagccaagaaggaaat 163  Q
    ||||||||||| ||||||||||||| |||||||| |||||  |||| ||||||||||||    
T  24482312 ttaacccagtttggtgcaacgtcacctacatctgggggctaacaagtcaagaaggaaat 24482370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 169
Target Start/End: Complemental strand, 17880904 - 17880840
Alignment:
Q  106 ttaacccagttcggtgcaacgtcacttacatct-gagggct-ccaagccaagaaggaaatctacta 169  Q
    ||||||||||||||||||||||||| ||| ||| | ||||| ||||||||||||||||||| ||||    
T  17880904 ttaacccagttcggtgcaacgtcacctac-tctggggggctaccaagccaagaaggaaatccacta 17880840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 169
Target Start/End: Original strand, 17279883 - 17279946
Alignment:
Q  106 ttaacccagttcggtgcaacgtcacttacatctgagggct-ccaagccaagaaggaaatctacta 169  Q
    ||||||||||||||||||||||||| ||| |||| ||| | |||||||| |||||||||| ||||    
T  17279883 ttaacccagttcggtgcaacgtcacctac-tctgggggataccaagccaggaaggaaatccacta 17279946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 125
Target Start/End: Complemental strand, 4124 - 4064
Alignment:
Q  65 aataaagtaaagtgtagagaaggaagaacacaagatatttattaacccagttcggtgcaac 125  Q
    ||||||||||||||||  ||||||||  ||||||||||||  |||||||||||| ||||||    
T  4124 aataaagtaaagtgtatggaaggaagcgcacaagatatttggtaacccagttcgatgcaac 4064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 2249 - 2184
Alignment:
Q  100 tatttattaacccagttcggtgcaacgtcacttacatctgagggct-ccaagccaagaaggaaatc 164  Q
    ||||| || ||||||||||||||||| |||| |||||||| ||||| |||||||| ||| ||||||    
T  2249 tatttgttcacccagttcggtgcaacttcacctacatctgggggctaccaagccaggaaagaaatc 2184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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