View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11090_low_35 (Length: 319)
Name: NF11090_low_35
Description: NF11090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11090_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 11 - 301
Target Start/End: Complemental strand, 35035164 - 35034876
Alignment:
| Q |
11 |
gatgaatggaaatttaaagatgcttaaatttagagataatagtcatttacaaataatgtaacatgcatgttcaagagtattattttggttttttgaactt |
110 |
Q |
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| T |
35035164 |
gatgaatggaaatttaaagatgcttaaatttagagataatagtcatttacaaataatgtaacatgcatattcaagagtattattttggttttttgaactt |
35035065 |
T |
|
| Q |
111 |
gctgacaaaacattctactattatatacatgttgattttcgcaagacttctctcgcgtttgttcgagaggtctacaacacaagtagaacggatcaatttc |
210 |
Q |
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| T |
35035064 |
gctgacaaaacattctactattata--catgttgattttcgcaagacttctctcgcgtttgttcgagaggtctacaacacaagtagaaaggatcaatttc |
35034967 |
T |
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| Q |
211 |
tcataaagttttgtctagaatttgaggctgtcaaatgggttttgctcaataggaatatcgtcctttctttattccagttatacccttaaac |
301 |
Q |
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| T |
35034966 |
tcataaaattttgtctagaatttgaggctgtcaaatggattttgctcaataggaatatcgtcctttctttatcccagttatacccttaaac |
35034876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 237
Target Start/End: Original strand, 40704226 - 40704324
Alignment:
| Q |
139 |
atgttgattttcgcaagacttctctcgcgtttgttcgagaggtctacaacacaagtagaacggatcaatttctcataaagttttgtctagaatttgagg |
237 |
Q |
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| T |
40704226 |
atgttgatgttcccaaggcttctctcgcggctgtccaagaggtctacaacactagtaggcgtgatcaatttctcatgaagcttcgtccggaatttgagg |
40704324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 57 - 237
Target Start/End: Complemental strand, 26626957 - 26626779
Alignment:
| Q |
57 |
ttacaaataatgtaacatgcatgttcaagagtattattttggttttttgaacttgctgacaaaacattctactattatatacatgttgattttcgcaaga |
156 |
Q |
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||||||| || ||||| || |||||||||||| ||||| |||||||||||||||| |||| |||| ||| |||| |||||||| |||| ||| |||| |
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| T |
26626957 |
ttacaaacaaggtaacttgtatgttcaagagttttattctggttttttgaacttgtggacagaacactctgctat--tatacatgctgatgttcccaagg |
26626860 |
T |
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| Q |
157 |
cttctctcgcgtttgttcgagaggtctacaacacaagtagaacggatcaatttctcataaagttttgtctagaatttgagg |
237 |
Q |
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||||||||||| ||| | ||||||||||||||| ||||| |||||||||||||| ||| || ||| |||||||||| |
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| T |
26626859 |
cttctctcgcggctgtccaagaggtctacaacactagtaggcgtgatcaatttctcatgaagcttcgtccggaatttgagg |
26626779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 57 - 237
Target Start/End: Original strand, 49117163 - 49117341
Alignment:
| Q |
57 |
ttacaaataatgtaacatgcatgttcaagagtattattttggttttttgaacttgctgacaaaacattctactattatatacatgttgattttcgcaaga |
156 |
Q |
| |
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||||||| || ||||| || |||||||||||| ||||| |||||||||||||||| |||| |||| ||| |||| |||||||| |||| ||| |||| |
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| T |
49117163 |
ttacaaacaaggtaacttgtatgttcaagagttttattctggttttttgaacttgtggacagaacactctgctat--tatacatgctgatgttcccaagg |
49117260 |
T |
|
| Q |
157 |
cttctctcgcgtttgttcgagaggtctacaacacaagtagaacggatcaatttctcataaagttttgtctagaatttgagg |
237 |
Q |
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| T |
49117261 |
cttctctcgcggctgtccaagaggtctacaacactagtaggcgtgatcaatttctcatgaagcttcgtccggaatttgagg |
49117341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 214
Target Start/End: Complemental strand, 15821832 - 15821667
Alignment:
| Q |
49 |
atagtcatttacaaataatgtaacatgcatgttcaagagtattattttggttttttgaacttgctgacaaaacattctactattatatacatgttgattt |
148 |
Q |
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| T |
15821832 |
atagtcaattacaaacaaggtaatttgtctgttcaagagtattattt-ggttttttgaatttgtggacagaacactctactat--tatacatgttaatgt |
15821736 |
T |
|
| Q |
149 |
tcgcaag---acttctctcgcgtttgttcgagaggtctacaacacaagtagaacggatcaatttctcat |
214 |
Q |
| |
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|| |||| ||||||||||| ||| | |||||||||||| || ||||| |||||||||||||| |
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| T |
15821735 |
tcccaaggctgcttctctcgcggatgtccaagaggtctacaatactagtaggcgcgatcaatttctcat |
15821667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 57 - 237
Target Start/End: Complemental strand, 35937802 - 35937624
Alignment:
| Q |
57 |
ttacaaataatgtaacatgcatgttcaagagtattattttggttttttgaacttgctgacaaaacattctactattatatacatgttgattttcgcaaga |
156 |
Q |
| |
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||||||| || ||||| || ||||||||||| ||||| |||||||||||||||| |||| |||| ||| |||| |||||||| |||| ||| |||| |
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| T |
35937802 |
ttacaaacaaggtaacttgtctgttcaagagttttattctggttttttgaacttgtggacagaacactctgctat--tatacatgctgatgttcccaagg |
35937705 |
T |
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| Q |
157 |
cttctctcgcgtttgttcgagaggtctacaacacaagtagaacggatcaatttctcataaagttttgtctagaatttgagg |
237 |
Q |
| |
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||||||||||| ||| | ||||||||||||||| ||||| |||||||||||||| ||| || ||| |||||||||| |
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| T |
35937704 |
cttctctcgcggctgtccaagaggtctacaacactagtaggcgtgatcaatttctcatgaagcttcgtccggaatttgagg |
35937624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 78 - 237
Target Start/End: Original strand, 21691128 - 21691285
Alignment:
| Q |
78 |
tgttcaagagtattattttggttttttgaacttgctgacaaaacattctactattatatacatgttgattttcgcaagacttctctcgcgtttgttcgag |
177 |
Q |
| |
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||||||||||| ||||| ||||||||||||||| |||| |||| |||||||| |||||||| |||| ||| |||| ||||||| ||| |||||| || |
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| T |
21691128 |
tgttcaagagttttattctggttttttgaacttatggacagaacactctactat--tatacatgctgatgttcccaaggcttctctggcggttgttcaag |
21691225 |
T |
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| Q |
178 |
aggtctacaacacaagtagaacggatcaatttctcataaagttttgtctagaatttgagg |
237 |
Q |
| |
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||||| ||||||| ||||| |||||||||||||| ||| || ||| |||||||||| |
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| T |
21691226 |
aggtccacaacactagtaggcgtgatcaatttctcatgaagcttcgtccggaatttgagg |
21691285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 243
Target Start/End: Complemental strand, 8516769 - 8516702
Alignment:
| Q |
176 |
agaggtctacaacacaagtagaacggatcaatttctcataaagttttgtctagaatttgaggctgtca |
243 |
Q |
| |
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|||||||||||||||||| || | |||||||||||||| ||| | ||||||||||||||| ||||| |
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| T |
8516769 |
agaggtctacaacacaaggaggagggatcaatttctcaagaagctccgtctagaatttgaggttgtca |
8516702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 135
Target Start/End: Complemental strand, 17606482 - 17606425
Alignment:
| Q |
78 |
tgttcaagagtattattttggttttttgaacttgctgacaaaacattctactattata |
135 |
Q |
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||||||||| ||||||| |||||||||||| ||| |||| |||||||| |||||||| |
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| T |
17606482 |
tgttcaagaatattattctggttttttgaatttgtggacagaacattctgctattata |
17606425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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