View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11090_low_37 (Length: 316)
Name: NF11090_low_37
Description: NF11090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11090_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 19 - 304
Target Start/End: Complemental strand, 48909724 - 48909439
Alignment:
| Q |
19 |
catttcatttgaaaattaaattctgattatcattggaattctaattgttcatcgtgccactaaaacatcacagtgtgatatttttgctactccaatgcac |
118 |
Q |
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| T |
48909724 |
catttcatttgaaatttaaattctgattatcattggaattctaattgttcatcgtgccactaaaacatcacagtgtgatatttttgctactccaatgcaa |
48909625 |
T |
|
| Q |
119 |
attaaaatcaatattcttttatcaatgtgagttgaacttatcatactgcatacactattcaatagaaattgaattcggccactctctcactcatgtaact |
218 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
48909624 |
attaaaatcaatattcttttaccaatgtgagttgaacttatcatactgcatacactattcaatagaaattgaattcagccactctctcactcatgtaact |
48909525 |
T |
|
| Q |
219 |
ctaaattttcaatcttatcctttcctcatttctctttcaccacgccaaacatatctctgtgaattatgttcctcctttgactctct |
304 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48909524 |
ctaaattttcaatcttatcctttcctcctttctctttcaccacgccaaacatatctctgtgaattatgttcctcctttgactctct |
48909439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 304
Target Start/End: Original strand, 15291609 - 15291897
Alignment:
| Q |
18 |
ccatttcatttgaaaattaaattctgattatcattggaattctaattgttcatcgtgccactaaaacatcacagtgtgatatttttgctactccaatgca |
117 |
Q |
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||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
15291609 |
ccatttcatttgaaatttaaattccgattatcattggaattctaattgttcatcgtgccactaaaacatcacagtgtgatatttttgttactccaatgca |
15291708 |
T |
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| Q |
118 |
cattaaaatcaatattcttttatcaatgtgagttgaacttatcatactgcat--acactattcaatagaaattgaattcggccactctctcactcatgta |
215 |
Q |
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||||||||||||||||||| || ||||||||||||||||||||||| || || ||||||||||||||||||||||||||| |||||||||| |||| || |
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| T |
15291709 |
cattaaaatcaatattcttgtaccaatgtgagttgaacttatcatattgaatggacactattcaatagaaattgaattcggtcactctctcagtcatcta |
15291808 |
T |
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| Q |
216 |
actctaaattttcaatcttatcctttcctcatttctctttcaccacgccaaacatatctctgtgaattatgttcctcctttgactctct |
304 |
Q |
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|| ||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
15291809 |
acactaaattttcaatcttatcctttcctcctttctctttcaccatgccaaacatttctctgtgaattatgttcctcctttcactctct |
15291897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 304
Target Start/End: Original strand, 7810196 - 7810484
Alignment:
| Q |
18 |
ccatttcatttgaaaattaaattctgattatcattggaattctaattgttcatcgtgccactaaaacatcacagtgtgatatttttgctactccaatgca |
117 |
Q |
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|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7810196 |
ccatttcatttgaaatttaaattctgattatcattggaattctaattgttcatcgtgccactaaaacatcacagtgtgatatttttgctactccaatgca |
7810295 |
T |
|
| Q |
118 |
cattaaaatcaatattcttttatcaatgtgagttgaacttatcatactgcat--acactattcaatagaaattgaattcggccactctctcactcatgta |
215 |
Q |
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|
|||||||||||||||||||||| |||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
7810296 |
cattaaaatcaatattcttttaccaatttgagttgaacttatcatattgcatggacactattcaatagaaattgaattcggccactctctcactcatcta |
7810395 |
T |
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| Q |
216 |
actctaaattttcaatcttatcctttcctcatttctctttcaccacgccaaacatatctctgtgaattatgttcctcctttgactctct |
304 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
7810396 |
actctaaattttcaatcttatcctttcctcctttctctttcaccacgccaaacatatctatgtgaattatgttcctcctttcactctct |
7810484 |
T |
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